Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120170.Seq
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical p...    30   2.1  
Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.8  
CU457741-13|CAM36354.1|  608|Caenorhabditis elegans Hypothetical...    29   2.8  
CU457741-11|CAM36352.1|  609|Caenorhabditis elegans Hypothetical...    29   2.8  
AF068201-1|AAC70927.1|  609|Caenorhabditis elegans aminopeptidas...    29   2.8  
AF068200-1|AAC72891.1|  609|Caenorhabditis elegans aminopeptidas...    29   2.8  
Z77669-6|CAB01243.2|  371|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.        28   6.4  
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    28   6.4  
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    28   6.4  
AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormo...    28   6.4  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF025451-14|AAB71199.1|  577|Caenorhabditis elegans Hypothetical...    28   8.5  

>Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/92 (20%), Positives = 37/92 (40%)
 Frame = +1

Query: 439 EQINLDANFYQQNVRVDHVDSHEREFVNQHGEFFFKEHNKIIQYLYQTIHKIEYVDMLMD 618
           +Q+N D  FY +   +          +N +           + + Y+TI  +   D    
Sbjct: 67  KQLNCDTIFYDELETIAEKSETRLNCLNYYKMVQKYLPKNALLFEYKTIDFMTSGDFYNM 126

Query: 619 KFNDKRLFLTELRDDVAREPDVQFEESDNICK 714
           KF D +L++    DDV R      + + ++C+
Sbjct: 127 KFEDDKLYIISNADDVTRRKCFPVKRAISVCR 158


>Z81553-11|CAC14333.1|  311|Caenorhabditis elegans Hypothetical
           protein F56H6.13 protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 153 VNYMGNCNTCQADMRVALNNLFRDLWNLDDE 245
           +N    C  C +DMR  +  ++  LWN+ ++
Sbjct: 142 LNNKSECYDCGSDMRCVVERIYNGLWNIQND 172


>Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.3 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 404 LIADMFGNDAELSKLIWMLIFTNKTYVSTTLIRTNAN 514
           L   + GND E   + W+L FT+  ++   + R N N
Sbjct: 284 LFLRVIGNDYETLMMPWVLFFTHPLFLRNKIARMNTN 320


>CU457741-13|CAM36354.1|  608|Caenorhabditis elegans Hypothetical
           protein C42C1.11c protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 520 NQHGEFFFKEHNKIIQYLYQTIHKIEYVDMLMDKFNDKRLFLTEL 654
           N   E F +++  I +Y Y+T+   E+ + L D F DK++ L  +
Sbjct: 403 NSRFEQFLRDY--IQKYAYKTVSTEEWKEYLYDSFTDKKVILDNI 445


>CU457741-11|CAM36352.1|  609|Caenorhabditis elegans Hypothetical
           protein C42C1.11a protein.
          Length = 609

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 520 NQHGEFFFKEHNKIIQYLYQTIHKIEYVDMLMDKFNDKRLFLTEL 654
           N   E F +++  I +Y Y+T+   E+ + L D F DK++ L  +
Sbjct: 404 NSRFEQFLRDY--IQKYAYKTVSTEEWKEYLYDSFTDKKVILDNI 446


>AF068201-1|AAC70927.1|  609|Caenorhabditis elegans aminopeptidase-1
           protein.
          Length = 609

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 520 NQHGEFFFKEHNKIIQYLYQTIHKIEYVDMLMDKFNDKRLFLTEL 654
           N   E F +++  I +Y Y+T+   E+ + L D F DK++ L  +
Sbjct: 404 NSRFEQFLRDY--IQKYAYKTVSTEEWKEYLYDSFTDKKVILDNI 446


>AF068200-1|AAC72891.1|  609|Caenorhabditis elegans aminopeptidase-1
           protein.
          Length = 609

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 520 NQHGEFFFKEHNKIIQYLYQTIHKIEYVDMLMDKFNDKRLFLTEL 654
           N   E F +++  I +Y Y+T+   E+ + L D F DK++ L  +
Sbjct: 404 NSRFEQFLRDY--IQKYAYKTVSTEEWKEYLYDSFTDKKVILDNI 446


>Z77669-6|CAB01243.2|  371|Caenorhabditis elegans Hypothetical
           protein T07F10.3 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 18  DEEYLPEDAFNYMLSTSTDELS---IYRIYHIAKMCRDVKMLK 137
           ++ Y P   FN  +S+  D+++   +YRI+   + CR  KM +
Sbjct: 147 NDSYNPNSEFNLHVSSVPDDMADAELYRIFDKYQSCRGAKMFR 189


>U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 769 HHNCTFSGLLTRRCGACKICKCYPILQTGHRVRVQHHRATRLKTNV 632
           + NC  +  +  RC AC+  KC  +      VRV       +K +V
Sbjct: 151 YENCAANRGVRTRCQACRFAKCLAVGMNRDNVRVNKETDKDVKPSV 196


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 769 HHNCTFSGLLTRRCGACKICKCYPILQTGHRVRVQHHRATRLKTNV 632
           + NC  +  +  RC AC+  KC  +      VRV       +K +V
Sbjct: 266 YENCAANRGVRTRCQACRFAKCLAVGMNRDNVRVNKETDKDVKPSV 311


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 769 HHNCTFSGLLTRRCGACKICKCYPILQTGHRVRVQHHRATRLKTNV 632
           + NC  +  +  RC AC+  KC  +      VRV       +K +V
Sbjct: 262 YENCAANRGVRTRCQACRFAKCLAVGMNRDNVRVNKETDKDVKPSV 307


>AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 2 protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 769 HHNCTFSGLLTRRCGACKICKCYPILQTGHRVRVQHHRATRLKTNV 632
           + NC  +  +  RC AC+  KC  +      VRV       +K +V
Sbjct: 151 YENCAANRGVRTRCQACRFAKCLAVGMNRDNVRVNKETDKDVKPSV 196


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 568  YLYQTIHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDVQFEES-DNICKFYTHHTDA 738
            +L + IH+ + +    ++F DK   L  L +++     + F+ S D I +F++  TD+
Sbjct: 1285 HLEKMIHRYQKLTQDTEQFKDKLTKLKSLDEELTEAMKLNFDVSGDQIQQFFSDMTDS 1342


>AF025451-14|AAB71199.1|  577|Caenorhabditis elegans Hypothetical
           protein C24H12.1 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +1

Query: 460 NFYQQNVRVDHVDSHEREFVNQHGEFFFKEHNKIIQ---YLYQTIHKI-EYVDMLMDKFN 627
           +F     R++  D    E +N H  FF  E+ K+ +     Y T  ++ + +D+L   F 
Sbjct: 110 HFMMNKARIEGYDWATHEDINDHISFFCTEYKKVNKSPCLSYGTSQELTKLLDILNGSFL 169

Query: 628 DKRLFLTELRDDVARE 675
              + LT  RD++  E
Sbjct: 170 IDHVELTMERDEIFGE 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,120,980
Number of Sequences: 27780
Number of extensions: 356086
Number of successful extensions: 1197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)