Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120168.Seq
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   138   9e-34
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   132   3e-32
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.4  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   7.6  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   7.6  

>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  138 bits (333), Expect = 9e-34
 Identities = 86/210 (40%), Positives = 110/210 (52%), Gaps = 4/210 (1%)
 Frame = +1

Query: 58  KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 234
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 235 GFLVVNGTKLPFSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHLLTWREVLKKLLYQLP 414
           G LV++G  +    +           G + +         Q       +   K+++   P
Sbjct: 65  GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124

Query: 415 VLMPPCLLWVLT*KLMTP---F*GHLKCFLHHKLFAPLAKVIQDNFEIFKGLMXXXXXXX 585
               P  +  +  +   P      +  C  +    APLAKVI D F I +GLM       
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTN--CLAPLAKVINDTFGIEEGLMTTVHATT 182

Query: 586 XXXXXXDGLSGKLWRDGRGAQQNIIPASTG 675
                 DG S K WR GRGA  NIIP+STG
Sbjct: 183 ATQKTVDGPSKKDWRGGRGASANIIPSSTG 212



 Score =  104 bits (250), Expect = 1e-23
 Identities = 48/71 (67%), Positives = 58/71 (81%)
 Frame = +3

Query: 255 NKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMF 434
           N I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS DAPM+
Sbjct: 72  NAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMY 131

Query: 435 VVGVNLEAYDP 467
           VVGVN E ++P
Sbjct: 132 VVGVNEEKFNP 142



 Score = 34.3 bits (75), Expect = 0.016
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +2

Query: 464 PPFKVISNASCTTNCLPHLQRL 529
           P  KVISNASCTTNCL  L ++
Sbjct: 142 PSEKVISNASCTTNCLAPLAKV 163


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  132 bits (320), Expect = 3e-32
 Identities = 84/210 (40%), Positives = 108/210 (51%), Gaps = 4/210 (1%)
 Frame = +1

Query: 58  KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 234
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 235 GFLVVNGTKLPFSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHLLTWREVLKKLLYQLP 414
           G LV++G  +    +           G   +         +       +   K+++   P
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124

Query: 415 VLMPPCLLWVLT*KLMTP---F*GHLKCFLHHKLFAPLAKVIQDNFEIFKGLMXXXXXXX 585
               P  +  +  +   P      +  C  +    APLAKVI D F I +GLM       
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTN--CLAPLAKVINDTFGIEEGLMTTVHATT 182

Query: 586 XXXXXXDGLSGKLWRDGRGAQQNIIPASTG 675
                 DG S K WR GRGA  NIIP+STG
Sbjct: 183 ATQKTVDGPSKKDWRGGRGASANIIPSSTG 212



 Score =  108 bits (259), Expect = 8e-25
 Identities = 50/71 (70%), Positives = 59/71 (83%)
 Frame = +3

Query: 255 NKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMF 434
           + I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS DAPMF
Sbjct: 72  HSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMF 131

Query: 435 VVGVNLEAYDP 467
           VVGVNLE ++P
Sbjct: 132 VVGVNLEKFNP 142



 Score = 34.3 bits (75), Expect = 0.016
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +2

Query: 464 PPFKVISNASCTTNCLPHLQRL 529
           P  KVISNASCTTNCL  L ++
Sbjct: 142 PSEKVISNASCTTNCLAPLAKV 163


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 377 QVSRCFICSGKDTSRLYNIFSPSFSPWNGLRVPF*ENGNFVPLTTRNPS*T-STLPLKRP 201
           Q+S+ FI    D +R   +F  SFSP+N  +     N     L T  PS T +T P   P
Sbjct: 613 QLSQNFILPNVDVARHVLLFILSFSPFNRKKSKTILNDT---LPTSIPSYTPATHPYAGP 669

Query: 200 WVESYLK 180
            + +Y K
Sbjct: 670 AINAYAK 676


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 261 FCSVNNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLSSLFNR 109
           F  + N+ESIL+L   L +     + E I++IV+   +D R     HLS L  +
Sbjct: 339 FKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLSVLLQK 392


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 73  GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 183
           GF RI    +R   EKG QVV   D  I  + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +1

Query: 40  LADNMSKIGINGFGRIGRLVLRASIEKGAQVVAINDPFIGLD------YMVYLFKYDSTH 201
           + D+  ++ +N F  +G+L++  + ++    +  ND    ++      YM Y+F+  +  
Sbjct: 515 VGDHTGQLWLNVFDDVGKLIMHKTADE-LNDLQENDENAFMNCMAEACYMPYIFQCRAKQ 573

Query: 202 GRFKGSVEVQDGFLVVN 252
             FKG + V+   + +N
Sbjct: 574 DNFKGEMRVRYTVMSIN 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,224
Number of Sequences: 5004
Number of extensions: 65144
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)