Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120168.Seq
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   1e-25
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   4.6  
SB_11178| Best HMM Match : DUF239 (HMM E-Value=2.9)                    28   8.0  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  113 bits (272), Expect = 1e-25
 Identities = 51/69 (73%), Positives = 60/69 (86%)
 Frame = +3

Query: 261  IAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVV 440
            ++VF+ +DP  IPWG+ GA+YVVESTGVFTT +KA  HL+GGAKKVIISAPSADAPMFV+
Sbjct: 847  VSVFACKDPTQIPWGETGADYVVESTGVFTTLEKAGFHLKGGAKKVIISAPSADAPMFVM 906

Query: 441  GVNLEAYDP 467
            GVN E YDP
Sbjct: 907  GVNHEKYDP 915



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 67/172 (38%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
 Frame = +1

Query: 172  VYLFKYDSTHGRFKGSVEVQDGFLVVNGTKLP-FSQKGTLRPFHGEKLGLNML*SLLVSL 348
            VY+FKYDSTHGRFKG+VE +DG LV+NG  +  F+ K   +   GE     ++ S  V  
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 349  PLQIKHLLTWREVLKKLLYQLPVLMPPCLLWVLT*KLMTP---F*GHLKCFLHHKLFAPL 519
             L+ K     +   KK++   P    P  +  +  +   P      +  C  +    APL
Sbjct: 877  TLE-KAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTN--CLAPL 933

Query: 520  AKVIQDNFEIFKGLMXXXXXXXXXXXXXDGLSGKLWRDGRGAQQNIIPASTG 675
             KVI DNF + +GLM             DG S K WRDGRGA QN+IPASTG
Sbjct: 934  VKVINDNFGLEEGLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTG 985



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 464 PPFKVISNASCTTNCLPHLQRL 529
           P   V+SNASCTTNCL  L ++
Sbjct: 915 PSMTVVSNASCTTNCLAPLVKV 936


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 14  SVIQQIFYNLPITCQKLESMDLAALAVWCSVLLLKRELKWS 136
           S+ + +FY   I+C+KL S+D+ AL  + S  LL   +K S
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSSLLHGTMKTS 64


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 406 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 272
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


>SB_11178| Best HMM Match : DUF239 (HMM E-Value=2.9)
          Length = 303

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -2

Query: 258 CSVNNKESI--LNLNTALKTAMGGIILEKINHIVKTDERV-IYSDHLSSLFNRSTEHQTA 88
           CS N    I  L +N    T   G ILE I H+V+    + + S    SL ++ T  + A
Sbjct: 234 CSANTATCISQLTVNDGDNTRFNGAILEPIVHLVEGISHLGVLSSVSCSLLHKVTTTKKA 293

Query: 87  NAAKSIDSN 61
              K+I ++
Sbjct: 294 KKKKTIPAH 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,575,150
Number of Sequences: 59808
Number of extensions: 470435
Number of successful extensions: 1012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)