Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120167.Seq
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 33 0.19
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 32 0.58
07_01_0125 - 944207-945778 31 0.77
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 31 1.0
07_01_0130 - 963856-965454 31 1.3
08_01_0870 - 8491020-8491109,8491523-8491660,8492442-8492568,849... 30 1.8
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 30 2.3
08_02_0016 - 11262103-11262242,11262278-11262892,11263319-112633... 29 3.1
01_06_1034 + 33962813-33963802 29 4.1
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 29 5.4
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 5.4
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 28 7.2
02_04_0014 + 18916942-18917142,18917350-18917628,18917719-189181... 28 7.2
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 28 7.2
04_01_0308 + 4188726-4190351 28 9.5
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 48 AKFYNVIDFCKGLE-IAHDDILDCNWD 125
A+FYNV C +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/71 (22%), Positives = 36/71 (50%)
Frame = +2
Query: 290 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 469
E D L++ ++++ + V +N EK++ E FKN+ + + EL+ + L
Sbjct: 167 ENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAEL 226
Query: 470 QSAEKLKTAIV 502
+ + + K A++
Sbjct: 227 EESRR-KLAVL 236
>07_01_0125 - 944207-945778
Length = 523
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -1
Query: 582 DAFRKYGQMLVFGNVARKRHRAIFASVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPT 403
+A+ + ++L FG+ K + + ASV+MA+FN D M + F +N + +
Sbjct: 336 EAYWYFFKVLAFGSSDPKDYPEV-ASVSMAMFNGYFDREMYNTFIGPFIDLNNMATFIQA 394
Query: 402 SFLNVSWVTI 373
S N W+++
Sbjct: 395 SIYNGDWLSL 404
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +2
Query: 284 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 463
+ E DL DKI + K L + ++ + + ND+ +FEQ + + + + +L
Sbjct: 709 ELESTNGDLNDKIAVLQKEGSSLASELQQLEASFKNLGNDLEQKFEQISV-MQKNNEELE 767
Query: 464 MLQSAEKLKTAIVTEAK 514
+ S + + A+V E K
Sbjct: 768 LANSNLQNELAMVQEQK 784
>07_01_0130 - 963856-965454
Length = 532
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/71 (23%), Positives = 38/71 (53%)
Frame = -1
Query: 582 DAFRKYGQMLVFGNVARKRHRAIFASVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPT 403
+A+ + ++L FG+ K H + ASV+M +FN D + + F + ++L+
Sbjct: 344 EAYWYFFKVLAFGSSDPKEHPEL-ASVSMMMFNVYFDHELYKNFTGPFMDLNIMASLIQA 402
Query: 402 SFLNVSWVTIN 370
+F +W++++
Sbjct: 403 TFYEGNWLSLH 413
>08_01_0870 -
8491020-8491109,8491523-8491660,8492442-8492568,
8492667-8492801,8493262-8493731
Length = 319
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNEL 448
+L + E +RD + + +++L + +K T + E FKNDV +Q E ++ +
Sbjct: 166 SLRRAEVEEKRDKVHKESKALLDYTRKAITKLTELKKMLEKFKNDVEK--QQAE-QMTDW 222
Query: 449 DAKLNMLQSAEK 484
KL M+ S E+
Sbjct: 223 QTKLVMMDSKER 234
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 341 HVLKQIQFCRANHHARLQFEGAATRCFCCK 252
H+LK++ C+ +H R QFE FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269
>08_02_0016 -
11262103-11262242,11262278-11262892,11263319-11263397,
11263466-11263612
Length = 326
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 224 VVENFDAVKFYNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSE 367
VV FD+ + K+NA+ L+ G D+ + + + ++ ++ KL N+E
Sbjct: 78 VVNEFDSGTHHIKANAMFELKQTGSVDEYKSQFDDLMYNI-KLYDNTE 124
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 177 WISACEK*FRLNGKLDRCPNCN 112
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVK-KLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 445
AL L+T E D L+ + ++ + + + F+V + +++ F+ F +L +
Sbjct: 107 ALEMLETVEELDPLQKEWRDTVRELAYDIEDCIDPFLVLVDQKQDEQSTFFKGFSYKLKK 166
Query: 446 LDAKLNMLQSAEKLKTAIVTEAK 514
+ A+ + E+LKT ++ +K
Sbjct: 167 MKARHEISNEIEELKTRVIEASK 189
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 120 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 245
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 28.3 bits (60), Expect = 7.2
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +1
Query: 481 KIENRHRNGSKNGTVTFPRDITKHQHLAIFSERIDD-RIKLAFVLGQER-HFRKRKMRFE 654
KI+ RN G P D KH + A SE +D +K L +E+ + KR E
Sbjct: 646 KIDYERRNALGEGLTNVPHDQRKHGNNATASESLDQVLVKHVSRLEREKIDYEKRNALEE 705
Query: 655 DDMEVLYD-GVHPNPLLAIQCINEKLYDKH 741
V +D H N A + +++ L KH
Sbjct: 706 VLTNVAHDQRKHDNNATASESLDQVLV-KH 734
>02_04_0014 +
18916942-18917142,18917350-18917628,18917719-18918114,
18924837-18925085
Length = 374
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 224 VVENFDAVKFYNKSNALLHLQTEGERDDLRDKIESVLKHVK 346
VV FD + K+NA+ L+ G D+ + + + +L +VK
Sbjct: 108 VVREFDFGTHHIKANAMFELKQTGTVDEYKSQFDDLLYNVK 148
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 484 FFGRLQHVKFGVEFVQTQFKLLKPVAHIVLER 389
FFG L H+K +E FKLL ++ LER
Sbjct: 27 FFGSLSHLKNDLECYLISFKLLPKYRNLHLER 58
>04_01_0308 + 4188726-4190351
Length = 541
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Frame = +2
Query: 146 KRNYFSQAEIQTRSQLVGRIVRDQAGVVENFDAVK--FYNKSNALLHL--QTEGERDDLR 313
++N S+AEI+ Q++ + + E+FDA K +SN L + + +D +
Sbjct: 212 EKNSLSEAEIKCLKQILEVAMEVKEAAAESFDAEKEEIMKQSNNLKRKIEENQASKDLVE 271
Query: 314 DKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDA-KLNMLQSAEKLK 490
+ + + + + +F +++ K ++G E E D K +L+ E K
Sbjct: 272 SENDKLRSKMVTVKQKHNQFEADNKSLKIELGALKEAKEATAKAFDVEKAGILKELEDPK 331
Query: 491 TAI 499
+
Sbjct: 332 RKV 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,674,615
Number of Sequences: 37544
Number of extensions: 404043
Number of successful extensions: 1253
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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