Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120167.Seq
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 33 0.26
SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_9009| Best HMM Match : Peptidase_C1 (HMM E-Value=5.9e-40) 32 0.45
SB_36734| Best HMM Match : SH2 (HMM E-Value=0.00043) 32 0.59
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 31 0.78
SB_27316| Best HMM Match : Retrotrans_gag (HMM E-Value=0.34) 31 1.0
SB_40646| Best HMM Match : eIF-5a (HMM E-Value=0.87) 31 1.4
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 29 4.2
SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26) 29 4.2
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_578| Best HMM Match : 7tm_1 (HMM E-Value=0.027) 29 4.2
SB_49235| Best HMM Match : Peptidase_C1 (HMM E-Value=7.5e-07) 29 5.5
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 5.5
SB_51097| Best HMM Match : Peptidase_C1 (HMM E-Value=9.3e-07) 29 5.5
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51) 29 5.5
SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11) 28 7.3
SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 28 7.3
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 28 7.3
SB_52664| Best HMM Match : Filament (HMM E-Value=0.3) 28 7.3
SB_44275| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_20371| Best HMM Match : U-box (HMM E-Value=0.075) 28 7.3
SB_20288| Best HMM Match : Retrotrans_gag (HMM E-Value=0.31) 28 7.3
SB_16232| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 28 7.3
SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 28 7.3
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 9.6
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 28 9.6
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39) 28 9.6
SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011) 28 9.6
SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 33.1 bits (72), Expect = 0.26
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Frame = +2
Query: 176 QTRSQLVGRIVRDQAGVVENFDAVKFYNKSNALLHLQTEGE---RDDLRDKIESVLKHVK 346
+ +++L + +A + E +++ + + ++ Q E E +++L +IES++ VK
Sbjct: 2353 KAKTELESALEEAKAKITEKEESLVAFAAESKIVRDQLERETEEKNELTSQIESLVDKVK 2412
Query: 347 KLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDA-KLNMLQSAEKLKTAIVTEAK 514
K S M +E K ++ Q E R +L A K M Q KLKT EAK
Sbjct: 2413 KYEEASSTVMKENENLKRNL-----QMETR--QLSAVKEEMKQLRGKLKTQEAEEAK 2462
>SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 30 VHNDTNAKFYNVIDFCKG---LEIAHDDILDCNWDSDQVYHLN 149
+H++ N N F K L +A +LDC W + +VYH N
Sbjct: 19 IHHNKNTDDNNNNSFVKKGELLNLAEQQLLDCTWSTPEVYHGN 61
>SB_9009| Best HMM Match : Peptidase_C1 (HMM E-Value=5.9e-40)
Length = 251
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 30 VHNDTNAKFYNVIDF---CKGLEIAHDDILDCNWDSDQVYHLN 149
+H++ N N F C+ L +A +LDC W + VYH N
Sbjct: 25 IHHNKNTDDNNNNSFVKKCELLNLAEQQLLDCTWSTPGVYHGN 67
>SB_36734| Best HMM Match : SH2 (HMM E-Value=0.00043)
Length = 661
Score = 31.9 bits (69), Expect = 0.59
Identities = 29/101 (28%), Positives = 43/101 (42%)
Frame = +1
Query: 430 IAFERTRRQT*HAAVGRKIENRHRNGSKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFV 609
I+F+ R G I GS + TVT+ D +QH+ I E ++ AF
Sbjct: 354 ISFKEAERILSELDQGESIVRPSSKGSDHLTVTWKVDQGIYQHIDIREEGKEN----AFS 409
Query: 610 LGQERHFRKRKMRFEDDMEVLYDGVHPNPLLAIQCINEKLY 732
LG + FED E++ + P LA + +N K Y
Sbjct: 410 LGHSLWIDTEE--FEDLDEIIARHIQPMAALAREILNHKYY 448
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 31.5 bits (68), Expect = 0.78
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 63 VIDFCKGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILM 242
V+ FC G +H D L C W S + Y+ + F +K+K D L +F T + ++
Sbjct: 702 VVKFCNGKSSSHVDPLQCFWLS-RDYYDGVVDFFLKKTKED--HLNVVFLTPRTRAMVIC 758
Query: 243 R 245
R
Sbjct: 759 R 759
>SB_27316| Best HMM Match : Retrotrans_gag (HMM E-Value=0.34)
Length = 186
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R +F+ +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRFQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_40646| Best HMM Match : eIF-5a (HMM E-Value=0.87)
Length = 209
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/79 (26%), Positives = 41/79 (51%)
Frame = +2
Query: 284 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 463
+T+ + DD+ DK+ + K V +L TN EK M + + R ++ ++R N++
Sbjct: 27 RTQQQLDDIHDKMLDMRKRVFELETN-EKCM------QQLLQEREKELQVRQNKISELQT 79
Query: 464 MLQSAEKLKTAIVTEAKMA 520
+ + + KT + T+A A
Sbjct: 80 LYDTCNQKKTELYTQAAKA 98
>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1471
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +3
Query: 30 VHNDTNAKFYNVIDFCKG---LEIAHDDILDCNWDSDQVYHLN 149
+H++ N N F K L +A +LDC W + VYH N
Sbjct: 168 IHHNKNTDDNNNNSFVKKGELLNLAEQQLLDCTWSTPGVYHGN 210
>SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +3
Query: 30 VHNDTNAKFYNVIDFCKG---LEIAHDDILDCNWDSDQVYHLN 149
+H++ N N F K L +A +LDC W + VYH N
Sbjct: 44 IHHNKNTDDNNNNSFVKKGELLNLAEQQLLDCTWSTPGVYHGN 86
>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +2
Query: 242 AVKFYNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE 421
A ++ N +N L L + E+ D D + + H+K+ N + E KN + E
Sbjct: 471 AERYVNIANTLACLYVDTEQFDKADTMHREVLHIKEKNNTITRGAAYREQVKNKLVKLAE 530
Query: 422 QFELRLNEL--DAKLNMLQSAEKLKTAIVTEAKM 517
+F + E +AK + + AE VT M
Sbjct: 531 EFYNKALEKHHEAKSGLKEIAELHNNIGVTHFSM 564
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 281 LQTEGERDDLRDKIESVL-KHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAK 457
+ EGERDDL+D +E+ K +K EK + + G E +L+ + + +
Sbjct: 705 MDVEGERDDLQDSLETAEGKTIKLTQELDEKMKLIAGIKEEKQGLAAEVKQLQKSSEELQ 764
Query: 458 LNMLQSAEKLK 490
+ + EKL+
Sbjct: 765 QQLTDTEEKLQ 775
>SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
Length = 245
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRHPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 284 QTEGERDDLRDKI---ESVLKHVKK-LNTNSEKFMVTHETFKNDVGNRFEQF-ELRLNEL 448
+T ERDDL+ K+ E L K+ L S K T + ++V R ELR N
Sbjct: 3142 RTSDERDDLKAKLEETEETLASTKENLEETSTKLSETEKLRSSEVSERDSSIEELRTNNE 3201
Query: 449 DAKLNMLQSAEKLKTAIVTEAKM 517
+ + ++ ++ E + A + + +
Sbjct: 3202 NLRGDLKRTKESFREACIENSDL 3224
>SB_578| Best HMM Match : 7tm_1 (HMM E-Value=0.027)
Length = 301
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Frame = +1
Query: 478 RKIENRHRNGSKNGTVT------FPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKR 639
RKI+NR+ G K TVT P++ TK + + K V G E H R+
Sbjct: 210 RKIKNRNTTGDKEATVTQRETSKTPKEATKEHRKQSMKGQNKEPSK---VRGLEAH-REN 265
Query: 640 KMRFEDDMEVLYDGVHPNPLLAIQCINE 723
K R E + E++ P + + +NE
Sbjct: 266 KDRNEQE-EIIKQSQEPGNVTCTENVNE 292
>SB_49235| Best HMM Match : Peptidase_C1 (HMM E-Value=7.5e-07)
Length = 122
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 84 LEIAHDDILDCNWDSDQVYHLN 149
L +A +LDC W + VYH N
Sbjct: 5 LNLAEQQLLDCTWSTPGVYHGN 26
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 284 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV--THETFKNDVGNRFEQFELRLNE 445
Q + E+DDL+ K++ + K ++K N+E+ + T E K R Q +L L E
Sbjct: 4280 QLQQEKDDLKSKLDQLKKTLQKSEANAEEALQRRTDELEKLQSQTRSLQSQLELIE 4335
>SB_51097| Best HMM Match : Peptidase_C1 (HMM E-Value=9.3e-07)
Length = 122
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 84 LEIAHDDILDCNWDSDQVYHLN 149
L +A +LDC W + VYH N
Sbjct: 5 LNLAEQQLLDCTWSTPGVYHGN 26
>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
Length = 567
Score = 28.7 bits (61), Expect = 5.5
Identities = 27/110 (24%), Positives = 48/110 (43%)
Frame = +2
Query: 146 KRNYFSQAEIQTRSQLVGRIVRDQAGVVENFDAVKFYNKSNALLHLQTEGERDDLRDKIE 325
KR F + E + +G I + A + N HL+ ++ K E
Sbjct: 400 KRLKFQEQETLQHQKRLGIICDEIAELQRNHSTTMAKLAQFKRKHLELSHRVLEVMVKQE 459
Query: 326 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQS 475
S+ K + + E+ V E+ + ++ N QF+ RLNEL +++ + QS
Sbjct: 460 SLRKAGYSVQADEEQLRVHMESIQVEL-NAPLQFKARLNELLSQIRLQQS 508
>SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11)
Length = 880
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 980
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 28.3 bits (60), Expect = 7.3
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Frame = +2
Query: 206 VRDQAGVVENFDAVKFYNKSNALLHLQTEGERDDLRDKIESVLK------HVKKLNTNSE 367
+RD + + ++ N+ L+ ERDDL + + + K HV N E
Sbjct: 1432 MRDLSQTERKLEHLQRLNQDAVAKQLELANERDDLLHRYQELEKETRESRHVLDSGRNDE 1491
Query: 368 -----KFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTEAKMA 520
+ ++ E K + E+ + R + L+ +L+S K A+ T+ K A
Sbjct: 1492 VERLGQQVIVLEVEKEQALAKLEELQKRNSLLERSAQLLESMRKENEALATKCKDA 1547
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 109 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 166
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 167 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 200
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_52664| Best HMM Match : Filament (HMM E-Value=0.3)
Length = 394
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 305 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 481
D I+ + K +K LNT EK+++ K V + E R E KL + + E
Sbjct: 115 DSEKTIKELHKDIKSLNTELEKYIMVESQLKEKVEQQEGMLE-RTREYTKKLQLAEVLE 172
>SB_44275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 26 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 83
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 84 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 117
>SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)
Length = 515
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 260 KSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMV-THETFK--NDVGNRFEQFE 430
K L Q + + LR ++E K + K ++ + E K N+V R EQF+
Sbjct: 65 KDTRRLLFQRDKDNATLRQELEKTRKDINKEQAQRKRVVEGCEEKLKTYNEVQRRCEQFK 124
Query: 431 LRLNELDAKLNMLQSAEKLKTAI 499
+L+ ++ L+ EK+K+ +
Sbjct: 125 TENEQLNVEMEKLK--EKVKSLV 145
>SB_20288| Best HMM Match : Retrotrans_gag (HMM E-Value=0.31)
Length = 220
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_16232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 95 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 152
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 153 LDKTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 186
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +2
Query: 281 LQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKL 460
L E +RD ++ + V K + L + FKN + + E+FE +L+ L +L
Sbjct: 1147 LDLEKQRDTIKQDLADVQKEHENLKSAVSISEGELLKFKNTLQSEKEEFEKKLSSLLEQL 1206
Query: 461 NMLQSAEKLKTAIVTE 508
+ ++S + TE
Sbjct: 1207 SEMESEVSVLNKSCTE 1222
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDV-GNRFEQFELRLNE 445
A L+T ++DD + ++S +K V+ L + V + G+R + + +L E
Sbjct: 108 ARFKLRTLKQKDD--EPVDSFIKKVRLLASECRYDNVDEHIIDALIFGSRRPRVQAKLLE 165
Query: 446 LDAKLNMLQSAEKLKTAIVTEAKMAR*RFRATLP 547
LD L + ++ + +T T A++ R T+P
Sbjct: 166 LDNTLTLAKAIDIARTEEATSAQLQDIRGTNTIP 199
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 174 ISACEK*FRLNGKLDRCPNCNQVCRRAQFQDLCKNLLHCRILRSCRCA-RICT*NCAC 4
I C+ LNG RC VC + + + KN L C +L S C I NC+C
Sbjct: 395 IDECDPNPCLNGATSRCTRPAIVCAIGRPRHMSKNFL-CYLLPSGTCVDGINGFNCSC 451
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 120 NCNQVCRRAQFQDLCKN--LLHCRILRSCRCARI--CT*NC 10
NC+QV + Q Q +C N L R+ + +C ++ C+ NC
Sbjct: 114 NCDQVVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYCSRNC 154
>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Frame = +2
Query: 11 QFQVQIRAQRHERKILQCNRFLQRS*NCARRHT*LQLGQRSSLP-FKRNYFSQAEIQTRS 187
+++ Q + R C ++ R+ NCAR+H + L F+ N+ + + T+
Sbjct: 498 RYRSQYKHTRRRHPCSTCEQYRSRNRNCARKHPYRSADAKKVLKNFQINFILEGGVVTKC 557
Query: 188 QLVGRIVRDQAGVVENFDAVKFYNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSE 367
+ G ++N + ++ +R+ +++ HV+ + T ++
Sbjct: 558 KYDKN--EKNVGSIKNKSTTQVKIDQTIAKNMSESVKRNTCKNRSNESATHVRIIQTQAQ 615
>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
Length = 788
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +2
Query: 209 RDQAGVVENFDAVKFYNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE 388
RD GV+ +AV FY ++ L +Q DL++ I + + N + +++
Sbjct: 29 RDSVGVIPEGNAVTFYCTASGDLPIQYSWTSADLQNNIRDLTMDSRYTQHNDGRLTISNV 88
Query: 389 TFKNDVG 409
D G
Sbjct: 89 QHAKDDG 95
>SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)
Length = 501
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 230 ENFDAVKFYNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVG 409
E + K N+S+ + E L ++E H K L E+ E + ++
Sbjct: 177 ETYIVGKNLNRSHRRRQGKVEQRLKSLEQELEQSQAHYKALKKELEESNAKCEAIERELT 236
Query: 410 NRFEQFELRLNELD-AKLNMLQSAEKLKTA 496
N +Q + NELD K+ EKL+ A
Sbjct: 237 NYRQQCKHLENELDRVKVKCESLKEKLENA 266
>SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 296 ERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKL 460
++ D+ + ES+ + +K L + K ++FK E +LNE AKL
Sbjct: 153 DKKDVDEINESLRREIKALKSELSKAKTERDSFKAKCEKNERLLESKLNECKAKL 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,870,429
Number of Sequences: 59808
Number of extensions: 512956
Number of successful extensions: 1723
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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