Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120167.Seq
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    31   0.85 
At3g27860.1 68416.m03474 PWWP domain-containing protein                30   1.5  
At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2...    30   2.0  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    29   2.6  
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    29   4.5  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    29   4.5  
At1g49560.1 68414.m05557 myb family transcription factor contain...    29   4.5  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    29   4.5  
At2g30250.1 68415.m03682 WRKY family transcription factor              28   6.0  
At2g27170.1 68415.m06029 structural maintenance of chromosomes (...    28   6.0  
At2g22610.1 68415.m02680 kinesin motor protein-related                 28   6.0  
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ...    28   6.0  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    28   6.0  
At5g57410.1 68418.m07172 expressed protein                             28   7.9  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    28   7.9  
At2g45140.1 68415.m05618 vesicle-associated membrane protein, pu...    28   7.9  

>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
 Frame = +2

Query: 131 SSLPFKRNYFSQAEIQTRSQLVGRIVRDQA----GVVENFDAVKFY-NKSNALLHLQTEG 295
           SS+PF +    + +   R Q++  + R  A    G  E    V+F  ++  ALL+ + + 
Sbjct: 22  SSIPFDKRR-KETQGTGRRQVLSTVNRQDANSDVGSTEECGKVEFTKDEVLALLNERAKA 80

Query: 296 ERDDLRDKIESVLKHVKKLNTNSEKFMVTHETF---KNDVGNRFEQFELRLNELDAKLNM 466
            + D + KIE +   +KKL      +    ET    K ++ +  +  E R +  D +L+ 
Sbjct: 81  GKFDTKGKIEQMTDIIKKLKVCVRWYQQVDETHVQDKENLSSSLQSAEKRYS--DKELDA 138

Query: 467 LQSAEKLKTAIVTEAK 514
               E+L+ A +TE K
Sbjct: 139 KTKEEELR-ATITEMK 153


>At3g27860.1 68416.m03474 PWWP domain-containing protein 
          Length = 652

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
 Frame = +2

Query: 161 SQAEIQTRSQLVGRIVRDQAGVVENFD-AVKFYNKSNALLHLQTEGERDDLRDKIESVLK 337
           ++ EI     L  R  + + G+ EN D  ++   +SN   HL+   ++DDL   + S+ K
Sbjct: 300 AEKEISNGKSLSSRKRKSKRGLDENDDDGIEKREESNDSNHLEESEKKDDLATPLASICK 359

Query: 338 H--------VKKLNTNSEKFMVT 382
                    VK+ N N E  + T
Sbjct: 360 RLNVDVSSCVKRCNGNGEAILQT 382


>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
           plant glutamate receptor family, PMID:11379626
          Length = 926

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = -1

Query: 621 LLAQNKSEFDAVVDAFRKYGQMLVFGNVARKRHRAIFASVTMAVFNFSADCSMLSLASSS 442
           +L+QN S++  V  +F+  G    FG V  K+   +   V+ A+ N +    M  + +  
Sbjct: 718 ILSQNSSKYTMVEPSFKTAG----FGFVFPKKS-PLTDDVSRAILNVTQGEEMQHIENKW 772

Query: 441 FKRNSNCSNL 412
           FK+ +NC +L
Sbjct: 773 FKKPNNCPDL 782


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
 Frame = +2

Query: 230 ENFDAVKFYNKSNALLHLQTEGERDDLRDK-IESVLKHVKKLNTNSEK----FMVTHETF 394
           E+   +  + + N +  L +E  +  L+ + +ES +  +KK     EK    +   +E+ 
Sbjct: 383 ESVQDILVHRRGNQMDELMSENSKLKLQQQSLESTMNLLKKQLEGREKMNKEYQKRYESA 442

Query: 395 KNDVGNRFEQFELRLNELDAK 457
            +D+    +QF+ R+N+L++K
Sbjct: 443 IDDICKLSDQFKNRINDLESK 463


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 368 FRCLYSVFLHVLKQIQFCRANHHARLQFEGAATRCF 261
           FR  Y + +H  +QI + R+N    L+F+G+ + C+
Sbjct: 141 FRAPYQL-IHNHQQIAYSRSNSGVNLKFDGSGSSCY 175


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +3

Query: 156  IFHKQKSKRDLNSLGALFATKQGLLKILM------RLNFTTKATRCCTFKLKASVMICAT 317
            + + +K K   +S+     T QGL ++LM        NF++ A+RC   K   +   CAT
Sbjct: 3607 VLYGEKCKAAFDSVSKSVQTLQGLRRVLMSYLHQKNSNFSSGASRCVVSKTPNNCYGCAT 3666


>At1g49560.1 68414.m05557 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 333

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 278 HLQTEG-ERDDLRDKIESVLKHVKKLNTNSEK 370
           H+Q EG   D+++  ++    H++K N+N+EK
Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEK 257


>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
            cellulose synthase catalytic subunit [gi:13925881] from
            Nicotiana alata, cellulose synthase-4 [gi:9622880] from
            Zea mays
          Length = 1181

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = -2

Query: 215  GREQCAQRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVV 36
            G ++ A    + + FL+V    + MVN+IA+ + +   +   F  ++K+   V F   V+
Sbjct: 1068 GDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVL 1127

Query: 35   VHV 27
             H+
Sbjct: 1128 CHL 1130


>At2g30250.1 68415.m03682 WRKY family transcription factor
          Length = 393

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 621 LLAQNKSEFDAVVDAFR--KYGQMLVFGN 541
           ++ Q  S+ D ++D FR  KYGQ +V GN
Sbjct: 316 VVVQTISDIDVLIDGFRWRKYGQKVVKGN 344


>At2g27170.1 68415.m06029 structural maintenance of chromosomes
           (SMC) family protein similar to basement
           membrane-associated chondroitin proteoglycan Bamacan
           [Rattus norvegicus] GI:1785540; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain. No suitalble
           start codon was identified.
          Length = 1207

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +2

Query: 305 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 484
           DL ++ E + KH  ++     +   +HE F      R E+   R  +   +  +    +K
Sbjct: 426 DLTERDEHIKKHEVEIGELESRISKSHELFNTKKRERDEEQRKRKEKWGEESQLSSEIDK 485

Query: 485 LKTAI 499
           LKT +
Sbjct: 486 LKTEL 490


>At2g22610.1 68415.m02680 kinesin motor protein-related 
          Length = 1093

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/63 (23%), Positives = 35/63 (55%)
 Frame = +2

Query: 305  DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 484
            +L  +++   KH++++ T  E   V + T  N+V   F++       +++  N+L+++ +
Sbjct: 939  ELEMRLKEQEKHIQEMATTREFPEVANAT-PNEVKTCFKEDNFGNENMESNTNILRTSNR 997

Query: 485  LKT 493
            LKT
Sbjct: 998  LKT 1000


>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 33  HNDTNAKFYNVIDFCKGLEIAHDDILDCN-WDSDQVYHLNEIIFHKQKSKRDLNSLGALF 209
           H      FY +++  + L    + +L CN W+   VYH N++   +++  R LNS   LF
Sbjct: 62  HQTQLGVFYEILEKARKL---CEKVLRCNRWNLKHVYHANKMKDLEKQISRFLNSQILLF 118


>At1g03080.1 68414.m00282 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1744

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +2

Query: 170 EIQTRSQLVGRIVRDQAGVVENFDAVKFYNKSNALLHLQTEGERDDLRDKIESVLKHVKK 349
           E+Q RSQ++  +     G+ E     K  +KS   L+L +      L++++  + + ++K
Sbjct: 522 ELQNRSQILKDMEARNNGLQEEVQEAKDQSKSLNELNLSSAASIKSLQEEVSKLRETIQK 581

Query: 350 LNTNSE 367
           L    E
Sbjct: 582 LEAEVE 587


>At5g57410.1 68418.m07172 expressed protein
          Length = 373

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/63 (26%), Positives = 23/63 (36%)
 Frame = -1

Query: 609 NKSEFDAVVDAFRKYGQMLVFGNVARKRHRAIFASVTMAVFNFSADCSMLSLASSSFKRN 430
           N +E+D  V +         F N     H   + + TM  F F A   + S    S  R 
Sbjct: 4   NDAEYDLKVLSQSASAGDYTFANEDNLEHCTKYLNQTMVTFGFPASLDLFSNDPVSISRT 63

Query: 429 SNC 421
            NC
Sbjct: 64  CNC 66


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = +2

Query: 251 FYNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFE 430
           F  K N  L +   G +  L +K E   + ++K+     K  V +  FK     +  QF+
Sbjct: 244 FPTKENMELLMSYTGGKWTL-EKWEQYFQELRKVLRVESKLRVFY--FKIQFSTKITQFK 300

Query: 431 LRLNELDAKLNMLQSAEKLK 490
            RLN +++    + S++KLK
Sbjct: 301 KRLNVVNSACEEVCSSQKLK 320


>At2g45140.1 68415.m05618 vesicle-associated membrane protein,
           putative / VAMP, putative similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 239

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 257 NKSNALLHLQTEGERD-DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 433
           + S  L+ +Q + E   DL+ K + +L+ V      + K  VTHE F  + G+R E+ +L
Sbjct: 62  SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKD-VTHEMFSKEAGHRVEETKL 120

Query: 434 RL 439
           R+
Sbjct: 121 RV 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,190,156
Number of Sequences: 28952
Number of extensions: 335252
Number of successful extensions: 1181
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)