Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120165.Seq
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    36   0.010
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    32   0.089
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.8  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   7.7  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +1

Query: 700 KFATLCIFRRTQDV*TS*AT*YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           K  T   FRR + +  +    Y RKS+P  +R+D Y II  P+ SE+A
Sbjct: 24  KVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESA 71



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 636 VTKALKAQRKVVKGEHGKRVRKIRNSVHFPQDPRRLNL 749
           V KA  AQ+ V KG H K  RK+R S  F + P+ L L
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTF-RRPKTLEL 39


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 700 KFATLCIFRRTQDV*TS*AT*YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           K  T   FRR + +  S    Y RKS+    R+D Y II  P+ SE+A
Sbjct: 24  KVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESA 71



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 636 VTKALKAQRKVVKGEHGKRVRKIRNSVHFPQDPRRLNL 749
           V KA  AQ+ V KG H K  +K+R S  F + P+ L L
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTF-RRPKTLQL 39


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 536 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 625
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 746 VQTSWVLRKMHRVANFPYSLPMFTFYNLPLSLKCFSNRFHYFFL 615
           V + W L         P  LP+    N+ LSL  FS+    FFL
Sbjct: 398 VDSKWELVTQKYQEYSPVMLPIAFIINIALSLGAFSSMMISFFL 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,498
Number of Sequences: 5004
Number of extensions: 31567
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)