Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120165.Seq
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    43   3e-04
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     43   4e-04
08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569           31   1.2  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           30   2.0  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 21/48 (43%), Positives = 29/48 (60%)
 Frame = +1

Query: 700 KFATLCIFRRTQDV*TS*AT*YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           K  T   F R + +  S    YPR S P RN++D Y I+K+PLT+E+A
Sbjct: 45  KIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESA 92


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%)
 Frame = +1

Query: 688 REYGKFATLCIFRRTQDV*TS*AT*YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           R+  K  T   F R + +  +    YPR S P RN++D Y I+K+PLT+E+A
Sbjct: 31  RKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESA 82


>08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569
          Length = 109

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 205 CPETSCACPESSLCPER 255
           C  T+C CP  SLCP+R
Sbjct: 40  CASTACRCPHLSLCPQR 56


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 142 VSQNTGTCPESSCACPETSCACPETSCA 225
           ++++  TCP + C CPE  C     S A
Sbjct: 116 ITEHEKTCPHAPCFCPEPGCGFAAASAA 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,967,878
Number of Sequences: 37544
Number of extensions: 212483
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)