Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120165.Seq
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  31   1.2  
SB_5982| Best HMM Match : PAP2 (HMM E-Value=8.3e-19)                   31   1.6  
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_38480| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              29   3.6  
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)                29   4.7  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +1

Query: 763 YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           YPR S P+ N++D Y IIK PLT+E+A
Sbjct: 178 YPRTSAPRINKLDHYAIIKHPLTTESA 204


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 139  CVSQNTGTCPESSCACPETSCACPETSCACPESSLCP 249
            C+  N   C + +  C   S  CP+ S  CP+S++ P
Sbjct: 998  CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSNVEP 1033


>SB_5982| Best HMM Match : PAP2 (HMM E-Value=8.3e-19)
          Length = 320

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 737 SWVLRKMHRVANFPYSLP-MFTFYNL 663
           SW++R +HR+A F Y +P +F  +N+
Sbjct: 113 SWIIRMLHRMAVFLYGIPLLFLIFNV 138


>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 148 QNTGTCPESSCACPETSCACPETSCACPE-SSLCPE 252
           +   T PE + A PE +   PE +  CPE +S  PE
Sbjct: 84  EGNSTSPEGNSASPEGNSTSPEGNSTCPEGNSTSPE 119



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 148 QNTGTCPESSCACPETSCACPETSCACPE-SSLCPE 252
           +   T PE + A PE + A PE + A PE +S  PE
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGNSTSPE 168



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 148 QNTGTCPESSCACPETSCACPETSCACPE-SSLCPE 252
           +   T PE +  CPE +   PE +   PE +S  PE
Sbjct: 98  EGNSTSPEGNSTCPEGNSTSPEGNSTSPEGNSTSPE 133



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 148 QNTGTCPESSCACPETSCACPETSCACPE-SSLCPE 252
           +   TCPE +   PE +   PE +   PE +S  PE
Sbjct: 105 EGNSTCPEGNSTSPEGNSTSPEGNSTSPEGNSTSPE 140



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 145 SQNTGTCPESSCACPETSCACPETSCACPE-SSLCPE 252
           ++   T PE + A PE +   PE + A PE +S  PE
Sbjct: 69  TEGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 105



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 148 QNTGTCPESSCACPETSCACPETSCACPE-SSLCPE 252
           +     PE +   PE + A PE +   PE +S CPE
Sbjct: 77  EGNSASPEGNSTSPEGNSASPEGNSTSPEGNSTCPE 112


>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 136 TCVSQNTGTCPESSCACPETSCACPETSCACPESS 240
           T     T   P+++ A PE + A PE + A PE++
Sbjct: 33  TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 136 TCVSQNTGTCPESSCACPETSCACPETSCACPESS 240
           T     T   P+++ A P+ + A PE + A PE++
Sbjct: 26  TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 136 TCVSQNTGTCPESSCACPETSCACPETSCACP 231
           T     T   PE++ A PE + A PE + A P
Sbjct: 40  TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71


>SB_38480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 639 TKALKAQRKVVKGEHGKRVRKIRNSVHFPQDPRRLNLLGNL 761
           TKALK+Q + +  + G+ ++ I  S+H  QD  RL+LL  L
Sbjct: 243 TKALKSQLENLSDDMGEELQFILRSIH--QDSLRLDLLEGL 281


>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 524 CGNSSQNCQTQASSFQIEDCTEAQKDWD*GTKKSSETCY*ST*GSEEGCK 673
           CGN + NC  +A +   E  +    DW       +ETC      SEE C+
Sbjct: 129 CGNGTSNCNCEACTDFSEVISAELYDW----VPQNETCVVKNYSSEEACR 174


>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 136 TCVSQNTG-TC--PESSCACPETSCACPETSCACPESSLC 246
           TCV Q  G TC  P+SS  CP+   A P +S  C   + C
Sbjct: 293 TCVDQVNGFTCLLPDSSETCPDNVGANPCSSNPCRNGATC 332


>SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)
          Length = 117

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 163 CPESSCACPETSCACPETSCACPESSL-CP 249
           CP +  ACP T   CP T   CP +   CP
Sbjct: 4   CPLTLLACPLTLFTCPLTPFTCPLTPFTCP 33



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 160 TCPESSCACPETSCACPETSCACPESSL-CP 249
           TCP +   CP T   CP     CP + L CP
Sbjct: 17  TCPLTPFTCPLTPFTCPLPPFTCPLTLLTCP 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,222
Number of Sequences: 59808
Number of extensions: 243864
Number of successful extensions: 1032
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)