Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120165.Seq
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    40   0.002
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    38   0.012
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      30   1.8  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   5.5  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    29   5.5  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   7.3  
U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical p...    28   7.3  
U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81131-2|CAB03425.1|  349|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +1

Query: 721 FRRTQDV*TS*AT*YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           FRR   + T+    +PRKS PK ++MD + II+ PLT+E+A
Sbjct: 37  FRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTESA 77



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 642 KALKAQRKVVKGEHGKRVRKIRNSVHF 722
           KAL A++KVVKG+     R++R SVHF
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHF 37


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 17/41 (41%), Positives = 29/41 (70%)
 Frame = +1

Query: 721 FRRTQDV*TS*AT*YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           FRR + + T+ A  Y RKS P R+++D++ +IK P T+E++
Sbjct: 36  FRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESS 76



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 636 VTKALKAQRKVVKGEHGKRVRKIRNSVHF 722
           V KA++A++ VVKG      + +R SVHF
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHF 36


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 136 TCVSQNTGTCPESSCACPETSCACPETSCACP 231
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 136 TCVSQNTGTCPESSCACPETSCACPETSCACP 231
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 136 TCVSQNTGTCPESSCACPETSCACPETSCACP 231
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 136 TCVSQNTGTCPESSCACPETSCACPETSCACP 231
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 695  YSLPMFTFYNLPLSLKCFSNRFHYFF 618
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 SCACPETSCACPETSCACPES 237
           +C   E SC+C    C+CPES
Sbjct: 99  ACDDSECSCSCSGGECSCPES 119


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 SCACPETSCACPETSCACPES 237
           +C   E SC+C    C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +1

Query: 136  TCVSQNTGTCPESSCACPETSCA----CPETSCACPES 237
            TCVS NT + P   C    T C     C +  C CP +
Sbjct: 1475 TCVSINTYSSPGDPCDLTNTICTGNSQCIDGICKCPNN 1512


>U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical
           protein C32D5.11 protein.
          Length = 770

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 681 HGKRVRKIRNSVHFPQDPR--RLNLLGNLIPKEVSA*EKSHGCLQHH 815
           H  R R I    HFPQ PR  R+  +  L  +     +++H  +Q H
Sbjct: 642 HLNRTRSILERRHFPQPPREQRIEEVEQLFNRAYQNMQQTHQAIQEH 688


>U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical
           protein F37A4.3 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -1

Query: 731 VLRKMHRVANFPYSLPMFTFYNLPLSLKCFSNRFHYFFLSLNPSLFGL 588
           +LR  H   NF Y + M T  N P       N  H    +L+P   GL
Sbjct: 139 ILRDFHADVNFNYCIIMRTQQNSPFFSNRRGNALHGDLKTLHPQTVGL 186


>Z81131-2|CAB03425.1|  349|Caenorhabditis elegans Hypothetical
           protein T24D1.3 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 799 PCDFS*AETSLGI--RLPRRFKRLGSCGKCT 713
           P DF    TS GI  R PRR  + GS G+CT
Sbjct: 245 PIDFEGPSTSTGITDRHPRRRNQDGSHGECT 275


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 142 VSQNTGTCPESSCACPETSCAC 207
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,888,770
Number of Sequences: 27780
Number of extensions: 188491
Number of successful extensions: 786
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)