Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120165.Seq
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   1.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   8.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   8.2  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 139 CVSQNTGTCPESSCACPETSCACPETSCACPE 234
           C + N G C       P  +   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 166 PESSCACPETSCACPETSCACPESSLCPER 255
           P  +   P  SCACP+      +  +C E+
Sbjct: 51  PRINSKSPLLSCACPDGLKLLSDGLMCVEK 80


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 139 CVSQNTGTCPESSCACPETSCACPETSCACPE 234
           C + N G C       P  +   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 166 PESSCACPETSCACPETSCACPESSLCPER 255
           P  +   P  SCACP+      +  +C E+
Sbjct: 51  PRINSKSPLLSCACPDGLKLLSDGLMCVEK 80


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 758 PNTQGSLCLREIAWMP 805
           P   GS C  +IAW P
Sbjct: 104 PGIFGSTCKIDIAWFP 119


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 524 CGNSSQNCQTQASSFQIEDCTEAQKD 601
           C NS +N     S+     C EA KD
Sbjct: 163 CCNSPENNTCSISNSYTNGCVEALKD 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,572
Number of Sequences: 438
Number of extensions: 2051
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)