Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120165.Seq
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    37   0.015
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    37   0.019
At1g32190.1 68414.m03959 expressed protein                             30   1.7  
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    28   6.8  

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 700 KFATLCIFRRTQDV*TS*AT*YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           K  T   F R + +       YP+ S   RN++D Y I+K+PLT+E+A
Sbjct: 37  KIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESA 84


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +1

Query: 763 YPRKSLPKRNRMDAYNIIKFPLTSEAA 843
           YP+ S   RN++D Y I+K+PLT+E+A
Sbjct: 58  YPKISATPRNKLDHYQILKYPLTTESA 84


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 154 TGTCPESSCACPETSCACPETSCAC 228
           +G C   SC+CP+  C  P  SC C
Sbjct: 298 SGLC-RPSCSCPKPRCPKPSCSCGC 321



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 160 TCPESSCACPETSCACPETSCACPESSLCP 249
           +CP+  C  P  SC C    C C + S CP
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCS-CP 334


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +1

Query: 139 CVSQNTGTCPESSCACPETSCACPETSCACPESSLCPER 255
           C     GTC E  C CP+ SC      C C +S  C  R
Sbjct: 665 CPCLLNGTCCEKYCGCPK-SCKNRFRGCHCAKSQ-CRSR 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,499,048
Number of Sequences: 28952
Number of extensions: 175479
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)