Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120164.Seq
         (530 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   2.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = +1

Query: 406 IGECPSIFVRTRYFVVLGI*MWRCI 480
           +G+      ++RYF+ + + +W+C+
Sbjct: 284 LGKIKENLEQSRYFIYMFVSVWKCL 308


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = +1

Query: 406 IGECPSIFVRTRYFVVLGI*MWRCI 480
           +G+      ++RYF+ + + +W+C+
Sbjct: 284 LGKIKENLEQSRYFIYMFVSVWKCL 308


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = +1

Query: 406 IGECPSIFVRTRYFVVLGI*MWRCI 480
           +G+      ++RYF+ + + +W+C+
Sbjct: 284 LGKIKENLEQSRYFIYMFVSVWKCL 308


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = +1

Query: 406 IGECPSIFVRTRYFVVLGI*MWRCI 480
           +G+      ++RYF+ + + +W+C+
Sbjct: 284 LGKIKENLEQSRYFIYMFVSVWKCL 308


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 337 TYVYTIAIITRRNNSIIAKCI-LLIGECPSIFVRT 438
           T+     ++T    SI+ K   LLIG C SI+V T
Sbjct: 56  TFFALSELLTDLATSILLKVSSLLIGFCASIYVGT 90


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 225 HECHKTLTPCSTHS 184
           H CH  L  C T S
Sbjct: 347 HRCHGNLQSCPTRS 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,352
Number of Sequences: 336
Number of extensions: 2897
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)