Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120164.Seq
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651...    28   4.1  
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541...    28   5.4  
11_01_0227 + 1767191-1767847                                           27   9.4  
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653...    27   9.4  
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    27   9.4  

>08_02_0087 +
           12163706-12163757,12164877-12164961,12165039-12165107,
           12165757-12165869,12167570-12167681,12167784-12167927,
           12169222-12169396,12169482-12169595,12169734-12169775,
           12171093-12171193,12171515-12171623
          Length = 371

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 183 RCVWSTASKFCDIRVYCL 236
           RC WSTAS+ CD+ V  L
Sbjct: 337 RCSWSTASRGCDVVVSAL 354


>02_02_0464 -
           10552347-10552466,10552683-10552928,10553866-10554135,
           10554231-10554413,10554493-10554688,10554775-10555079,
           10555515-10555604,10555689-10555806,10555991-10556088,
           10556187-10556272,10557622-10557736
          Length = 608

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 255 ASEIIIEGNTHECHKTLTPCSTHSDCNL-CREGLANCQLFDEDTIVKMRGDDGQEQEKLI 79
           ++E I+EG T++C++  T   T     L   EG      F++  I+ M G++G  +   I
Sbjct: 340 STEEIVEGQTYQCYRYPTMTKTRCGFKLSVTEG-----SFNDSQIIVMLGENGTGKTTFI 394

Query: 78  R 76
           R
Sbjct: 395 R 395


>11_01_0227 + 1767191-1767847
          Length = 218

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 24  YTIGRVLDPKPSSRLLPLE*ASPVLGRHRHAS 119
           Y  GRV+ P+PSS  +P    +PV+GR R A+
Sbjct: 101 YWAGRVIRPRPSS--MP----TPVIGRRRRAA 126


>07_03_1284 +
           25463476-25463557,25465088-25465220,25465307-25465378,
           25465476-25465544,25465629-25465700,25465792-25465860,
           25466155-25466220,25466299-25466364,25466452-25466786,
           25466931-25467214,25467796-25468067,25468152-25468287,
           25468625-25468755,25468890-25469046,25469185-25469327,
           25470105-25470190,25471530-25472962,25474563-25474712,
           25475221-25475322,25475467-25475568
          Length = 1319

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 77  RISFSCSWPSSPRILTIVSSSNNWQLANPSRHRLQSLCVEHG 202
           +I+FS ++P  P  L I   +N  +L +PS   L   C EHG
Sbjct: 422 KINFS-AFPGHPSDLFIELVANISRLNHPSLSELVGYCSEHG 462


>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 313 SWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPS 423
           SWC   +  +   I ++ R+  +++ KC+ +  + PS
Sbjct: 128 SWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPS 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,512
Number of Sequences: 37544
Number of extensions: 279299
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)