Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120164.Seq
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.44 
SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29)                   30   1.4  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               29   3.1  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   5.4  
SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           27   9.5  
SB_14447| Best HMM Match : EutH (HMM E-Value=1.1)                      27   9.5  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         27   9.5  
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +3

Query: 219 IRVYCLRLLFRTRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQY 383
           IR++      R     +H RV + +++   H++     +HIY  +IRVH  + H +   Y
Sbjct: 77  IRIHIYDKHIRVHIYNKHIRVHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYDKHIRVHIY 136

Query: 384 NSKMHFT 404
           N+   +T
Sbjct: 137 NNTYVYT 143



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = +3

Query: 141 TTGSWLILRGTDCNRCVWSTASKFCDIRVYCLRLLFRTRFNERHARV-VKNRNRITHLF- 314
           TT +++    T  N  V+++ +    + +Y   +  R    ++H RV + +++   H++ 
Sbjct: 10  TTNTYVYTSTT--NTYVYTSTTNTYGVHIYDKHM--RVHIYDKHMRVHIYDKHIRIHIYD 65

Query: 315 ---MVHIYQVYIRVHYCNNH*KKQQYN 386
               VHIY  +IR+H  + H +   YN
Sbjct: 66  KHIRVHIYDKHIRIHIYDKHIRVHIYN 92


>SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29)
          Length = 214

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 243 IIEGNTHECHKTLTPCSTHSDC 178
           + E N +EC++T +PCS H  C
Sbjct: 80  LCEVNVNECNETQSPCSEHGAC 101


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 243 IIEGNTHECHKTLTPCSTHSDC 178
           + E N +EC++T +PCS H  C
Sbjct: 659 LCEVNVNECNETQSPCSEHGAC 680


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 74   ARISFSCSWPSSPRILTIVSSSNNWQLANPSRHRLQS-LCVEHGVKVL*HSC 226
            A I    + P++PR++ +  S   W+ + PSR  L S L   H ++    SC
Sbjct: 2467 ADIKLEATPPATPRLIRVQESPRPWKRSAPSRQVLSSPLFSRHNIRDDLESC 2518


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -3

Query: 381 TVVSSSDYCNSVHVCKLDRCAP*RGALSYCGF*QHGRAAH*TASE--IIIEGNTHECHKT 208
           T+++ +   +SV  C    C+  +    Y    + GR  H +  +   +  G   +C K+
Sbjct: 461 TILTMNRTLSSVEGCLDSMCSGCKNGYYYLE--KDGRFCHKSCPKGYFVSYGRCLKCLKS 518

Query: 207 LTPCSTHSDCNLCREGL 157
              CST   C  C++GL
Sbjct: 519 CESCSTAIKCEKCKKGL 535


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 147 GSWLILRGTDCNRCVWSTASKFCDIRVY 230
           G WL+ + T C   VW  A ++   RVY
Sbjct: 518 GEWLLRKATSCEHEVWYQALRWRGERVY 545


>SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1157

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 108 DDGQEQEKLIRAGEAYCLALDRERARSC 25
           D  +++E + R    YCLAL+ +++ SC
Sbjct: 232 DADEDEEPIYRGDGIYCLALEGQQSISC 259


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -3

Query: 252  SEIIIEGNTHECHKTLTPCSTHSDCNLC----REGLANCQLFDEDTIVKMRGDDGQEQEK 85
            S  ++E     C +T  P +T   C+      +E   +   F E  I K +G D QE  K
Sbjct: 1085 SSSLLEQALRFCQQTAKPQATPQSCSSSAVHSQESSLDSHPFPEQDISKTKGQD-QETGK 1143

Query: 84   LIRAGEAYCLALDRE 40
                GE  CL  D+E
Sbjct: 1144 T--KGEKECLFPDQE 1156


>SB_14447| Best HMM Match : EutH (HMM E-Value=1.1)
          Length = 418

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 334 FTYVYTIAIITRRNNSIIAK 393
           F Y    A++TRR NS+IAK
Sbjct: 173 FVYPVFFAVLTRRRNSLIAK 192


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 234  GNTHECHKTLTPCSTHSDCNLCREGLAN 151
            G+  +C  + + CS + DC L ++ L+N
Sbjct: 1554 GDNGQCENSTSVCSNNYDCGLTQDQLSN 1581


>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1388

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 172 QIAIAVCGARRQSFVTFVCIAFDYYFGRGSMSGTPVLS 285
           ++  A CG R+ SFVT      D+ FG GS +G   L+
Sbjct: 585 RLECATCGVRKHSFVTIQAFC-DWLFG-GSNAGYTCLA 620


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,318
Number of Sequences: 59808
Number of extensions: 359753
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)