Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120164.Seq
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U21308-18|AAB93311.1|  208|Caenorhabditis elegans Hypothetical p...    28   4.8  

>Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical
           protein F54F7.6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 325 SIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTRYFVV 453
           ++ FT + T  ++ R  N++  +CI+ + E P  F  +  FVV
Sbjct: 48  TVVFTQLNTTNVVERLGNNLF-RCIVKVNELPRNFQHSHNFVV 89


>U21308-18|AAB93311.1|  208|Caenorhabditis elegans Hypothetical
           protein ZK1290.1 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 246 IIIEGNTHECHKTLTPCSTHSDCNLC 169
           + +E  T   ++T TP   H+DC LC
Sbjct: 23  VAVEETTKAANETTTPDGPHADCFLC 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,016,663
Number of Sequences: 27780
Number of extensions: 251104
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)