Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120163.Seq
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    28   1.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   5.1  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    26   6.7  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    26   6.7  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 437 KIFPTTSKTKRSTFRLPAICFTRCRVRAQRHDLVKERKQIRLQTEYLAKLFNNTINDFKL 616
           + FP  S  K  T ++      RC    +R  LV E K ++ +TE   K+ +   ND   
Sbjct: 69  EFFPLLSLKKEITLQIE-----RCSDPNERGKLVNEAKGLKKKTEEYNKIISKVTNDLYQ 123

Query: 617 Y 619
           Y
Sbjct: 124 Y 124


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 364 YALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFH 501
           YA F+ +    IN+ +  L+        N V+N   +F+ST  ++H
Sbjct: 850 YATFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFNSTDAVYH 895


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 646 DRSVDCCCPCQLLHKSLFNTRNYVKTLNC 732
           +RS DC CP  +  + +FN+R  V  L+C
Sbjct: 264 ERSTDCNCP--ICGEYMFNSRERVIFLSC 290


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 125 ARRQHVRHQAQY*TRIQNASVGPHVCA*QQTANVF 21
           ARRQ  R QA++  R  + S+G +  + Q ++N+F
Sbjct: 173 ARRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIF 207


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 660 IDTSVRSINSYNSVYSLKSFIVLLNSF 580
           +D SVR I   N  Y++    VL+NSF
Sbjct: 141 LDLSVRQIEHLNRKYNVNVPFVLMNSF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,819
Number of Sequences: 5004
Number of extensions: 68101
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)