Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120163.Seq
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565...    31   0.76 
06_02_0061 - 11043183-11043417,11043556-11043796,11043923-110441...    30   1.7  
02_01_0166 + 1154695-1156569                                           28   9.3  

>10_08_0472 -
           18154797-18155048,18155332-18156318,18156424-18156546,
           18156654-18156808,18157611-18157824,18158977-18159077,
           18159162-18159285,18159584-18159655,18159897-18159961,
           18160167-18160233,18160917-18161015,18161099-18161167,
           18161286-18161409,18162507-18162566,18163111-18163634
          Length = 1011

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 518 AQRHDLVKERKQIRLQTEYLAKLFNNTINDFKLYTELYEFIERTEVSIAVVR 673
           A+   L K +KQ+ L TEY  K+  N I   KL + +   I R ++ I  VR
Sbjct: 790 AKADQLAKIQKQVGLPTEYAQKIIKN-ITTTKLSSAIEASISRGQIGIQQVR 840


>06_02_0061 -
           11043183-11043417,11043556-11043796,11043923-11044106,
           11044228-11044437,11045135-11045423,11045787-11045923,
           11046019-11046137,11046405-11046518,11046710-11046803
          Length = 540

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +2

Query: 458 KTKRSTFRLPAICFTRCRVRAQRHDLVKERKQIRLQTEYLAKLFNNTINDFKLYTELYEF 637
           K K+ + +LPA C  +C +R+ +HD   +  ++        K+F+  +    +  E  + 
Sbjct: 356 KCKKLSIKLPAWCILQCLIRSAKHDSHADDVEVTNFNWPKDKVFDWMLGPLLVIKEQMKQ 415

Query: 638 IERTE 652
           +E TE
Sbjct: 416 LELTE 420


>02_01_0166 + 1154695-1156569
          Length = 624

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 539 KERKQIRLQTEYLAKLFNNTIND--FKLYTELYE 634
           K R+ + L T  +  LF N +ND  +K+ T LY+
Sbjct: 476 KIRQNVDLSTNLVDTLFRNNLNDRAYKIVTSLYD 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,015,692
Number of Sequences: 37544
Number of extensions: 395614
Number of successful extensions: 910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)