Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120163.Seq
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex...    32   0.36 
At1g50290.1 68414.m05638 expressed protein                             31   1.1  
At5g22130.1 68418.m02576 mannosyltransferase family protein simi...    30   1.9  
At5g62720.2 68418.m07871 integral membrane HPP family protein co...    29   4.5  
At5g62720.1 68418.m07872 integral membrane HPP family protein co...    29   4.5  

>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 433

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 232 EKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPAD 116
           EK + F Y    F  +P  C+ +E NYNY M  FK   D
Sbjct: 314 EKLRDFRYGSNYFTGEPATCRYLE-NYNYTMNCFKDVRD 351


>At1g50290.1 68414.m05638 expressed protein
          Length = 134

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 295 RHH*TTCSRFKRVRDLKYLGFEKYKFFEYVIFQFC 191
           +H    CSRF    +L+ + FE+Y  F ++I  FC
Sbjct: 97  QHIGIACSRFYMFMELRSIKFEEYSDFSFLITCFC 131


>At5g22130.1 68418.m02576 mannosyltransferase family protein similar
           to mannosyltransferase from Rattus norvegicus
           [GI:11414877], Homo sapiens [GI:11414879]; contains Pfam
           profile PF05007: Mannosyltransferase (PIG-M)
          Length = 450

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -3

Query: 658 RHFGPFDKLV----QLSVQFEIVYCVVEQLCQIFCLQSNLFALLHQIVT 524
           R F   +KL+    Q +VQF +V+C  + L     LQ+  F   ++++T
Sbjct: 300 RQFSAVEKLISFLPQFTVQFALVFCFSQDLVFCIFLQTVAFVTFNKVIT 348


>At5g62720.2 68418.m07871 integral membrane HPP family protein
           contains Pfam domain, PF04982: HPP family
          Length = 200

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 36  LLLSTHMWPNTGVLNARLILCLMSHMLSAGALNICIQ*L*LFSIIL 173
           LLLS  +WP  G   A  +L  M  MLS   +++ +  L   S IL
Sbjct: 90  LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAIL 135


>At5g62720.1 68418.m07872 integral membrane HPP family protein
           contains Pfam domain, PF04982: HPP family
          Length = 243

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 36  LLLSTHMWPNTGVLNARLILCLMSHMLSAGALNICIQ*L*LFSIIL 173
           LLLS  +WP  G   A  +L  M  MLS   +++ +  L   S IL
Sbjct: 90  LLLSDVIWPAAGAFAAMALLGRMDQMLSPKGISMSVAPLGAVSAIL 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,522,761
Number of Sequences: 28952
Number of extensions: 339317
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)