Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120162.Seq
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    29   1.0  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    28   1.4  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   3.2  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   3.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   4.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   4.2  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   5.5  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   5.5  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   7.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   7.3  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    25   9.7  

>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 530 KRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKK 703
           +R +N++     T QG +  +    +NF NK N L       E  DLR K   V+  V  
Sbjct: 125 QRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR-KGAYVISPVPF 183

Query: 704 LNTNS 718
           +N N+
Sbjct: 184 INGNN 188


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/71 (19%), Positives = 33/71 (46%)
 Frame = +2

Query: 509 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 688
           I  ++++  D  SL         ++ ++   NF +++    H  ++  + +LR   + + 
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306

Query: 689 KHVKKLNTNSE 721
           KH K+   N+E
Sbjct: 307 KHAKEAQKNAE 317


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 512 FHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 622
           FH Q+ KRD+ +L  ++ T    L  L+   F + +N
Sbjct: 82  FHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = +2

Query: 32  SNLDALTLQYWPDVDRDIFCNVNKQIRAPYS----------YNYKGTKFSRCITKELLDK 181
           S ++   LQ WPDV   +F +   ++  P S          ++Y+GTK    +    L K
Sbjct: 267 SRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKK 326

Query: 182 LK 187
           LK
Sbjct: 327 LK 328


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 644 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKND 757
           EGE DD+   +ES  + +++   +S+K +   E  +ND
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRND 410


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 453 RAQFQDLCKNLLHCRIL 403
           RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
 Frame = +2

Query: 539  LNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRDKIESV-LKHVK 700
            + S G L A T+ G+ +     LMR +F+     L+     GE+DD +   E++ L  + 
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLA 1440

Query: 701  KLNTNSEKFMVTHETFKN-DVGTGLSSL 781
             + T +    +  +   N  +GT + +L
Sbjct: 1441 PMGTGAFDIYLDQDMLMNYSLGTAVPTL 1468


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 585 FNNPCLVANNAPNELRSRLDFCL*KIFRLNGKLDRCPNCNQVCRRAQFQDL 433
           FN    +AN A N     L     + FRL  + + C    ++C   QF D+
Sbjct: 315 FNTARNLANTADNPSVKGLQSEFQRAFRLMSENNACERLCKICEEYQFLDI 365


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 303 HINVQQWSHIVKWDSFKCNTHSF 371
           H++V  WS I K+D++     S+
Sbjct: 74  HLSVDSWSSITKYDNYTVENESY 96


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 546 ELRSRLDFCL*KIFRLNGKLDRCPNC 469
           ++ +  D C  +  R NG+L +C NC
Sbjct: 6   KISTACDLCRQRKLRCNGELPKCQNC 31


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 650  ERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGTGLSSLN 784
            + D    KI+ + K V+KLN +           K ++G   +SLN
Sbjct: 1282 DNDAKLGKIQELEKEVEKLNASLNPLQTEINELKAEIGAKTASLN 1326


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 123 LYGARICLLTLQKISLSTSGQYCNVSASKFESCI 22
           +Y  R CL+    + L    QYC     + ESC+
Sbjct: 82  IYNKR-CLMAYHNLRLQRLRQYCWSGGKRMESCL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,416
Number of Sequences: 5004
Number of extensions: 60176
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)