Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120162.Seq
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    37   0.017
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    33   0.20 
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275...    29   3.3  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    29   3.3  

>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +2

Query: 539 LNSLGALFATKQGLLKIL-MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTN 715
           + SL   FA +Q   + L + LN  N S  ++ +  E   D L++ ++++ + V  +N  
Sbjct: 132 MKSLQEAFAVQQARSESLSLALNGQNSSEDVI-VALENHNDYLKEVVDNLRQAVSIINRK 190

Query: 716 SEKFMVTHETFKNDVGTGLSSLNCV 790
            EK++   E FKN+    L  + C+
Sbjct: 191 HEKYLDEIEAFKNNQSRELHEVKCL 215


>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 402 AKFYNVIDFCKGLE-IAHDDILDCNWD 479
           A+FYNV   C  +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330


>09_04_0160 +
           15226762-15227032,15227138-15227373,15227469-15227565,
           15227657-15227783,15227870-15228482,15228572-15228835,
           15228918-15229130,15229253-15229460,15229552-15229748,
           15229830-15230183,15230287-15230874
          Length = 1055

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +1

Query: 685 FKTCKKTEYKQRKIYGHPRNVQERCGNR--FEQFELRLNELDAK 810
           F   +K +Y + K+  HP  VQER   +  +E+F++R+N L AK
Sbjct: 423 FYFSQKVDYLKDKV--HPNFVQERRAMKREYEEFKVRINALVAK 464


>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 695 HVLKQIQFCRANHHARLQFEGAATRCFCCQ 606
           H+LK++  C+ +H  R QFE      FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,167,763
Number of Sequences: 37544
Number of extensions: 358614
Number of successful extensions: 956
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)