Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120162.Seq
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.83 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   1.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   1.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   1.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.8  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 447 QFQDLCKNLLHCRILRSCRCARICT*NCAC 358
           +++  C  L HC    +C C   C   C C
Sbjct: 738 RYEAHCFALCHCCDFDACDCEMTCPAGCKC 767


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 357 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 446
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 357 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 446
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 357 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 446
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 357 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 446
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 18  RICKIQTWTRSRCSIGRTWTGIFFVTL 98
           ++ K  TWT  R +I +T TG  F+T+
Sbjct: 487 QVIKQNTWTVFRDAITQTGTGPAFLTI 513


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 509 YFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 387
           +F+ +V +I  P ++   ++  +  FA I   +  CV VVV
Sbjct: 289 FFLLVVEIIP-PTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 509 YFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 387
           +F+ +V +I  P ++   ++  +  FA I   +  CV VVV
Sbjct: 289 FFLLVVEIIP-PTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 276 FDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTN 401
           FD  D   Y+ N  Q  H  K D+   N H+ +  +     N
Sbjct: 417 FDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNN 458


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 133 IIIAVRCAYLFVNVTKNIPVHVRPIL 56
           +I  +RC YLF++V       V P++
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPVM 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,781
Number of Sequences: 438
Number of extensions: 4192
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)