BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120162.Seq (813 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 32 0.39 At5g03990.1 68418.m00379 expressed protein predicted protein, Ar... 30 1.6 At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative... 29 3.7 At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 4.9 At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to ... 29 4.9 At3g04670.1 68416.m00500 WRKY family transcription factor simila... 29 4.9 At1g49560.1 68414.m05557 myb family transcription factor contain... 29 4.9 At1g42710.1 68414.m04932 hypothetical protein 28 6.4 At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl... 28 8.5 >At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to transcription factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 862 Score = 32.3 bits (70), Expect = 0.39 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Frame = +2 Query: 497 FKRNIFHKQKSKRDLNSLGALFATKQGL---LKILMRLNFDNKSNALLHLQTEGERDDLR 667 F + + + KR G +FA GL L +L + FD NA TE D Sbjct: 243 FLNTLTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEG 302 Query: 668 DKIESVLKHVKKLNTNSEKFMVTHETFKNDVGTGLS 775 DKIE K KK VT + K D G++ Sbjct: 303 DKIE---KKGKKRGRGKSSESVTRKKLKTDDVVGMN 335 >At5g03990.1 68418.m00379 expressed protein predicted protein, Arabidopsis thaliana Length = 302 Score = 30.3 bits (65), Expect = 1.6 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%) Frame = +3 Query: 288 DYKKYHINVQQWSH-----IVKWDSFKCNTHSFKYRYVHN 392 D+ + N W H WD CN +SF Y+ V N Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKVEN 246 >At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative strong similarity to gi:4467359 Length = 1116 Score = 29.1 bits (62), Expect = 3.7 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +2 Query: 497 FKRNIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 622 F + +FH+ K++ D S K G LK L + FD K N Sbjct: 356 FFKKLFHESKNEDDKVSNAVDDEEKDGFLKKLFKEKFDEKRN 397 >At5g67320.1 68418.m08490 WD-40 repeat family protein strong similarity to unknown protein (ref|NP_005638.1) Length = 613 Score = 28.7 bits (61), Expect = 4.9 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = +2 Query: 614 KSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGTG 769 K L + E ER+ R+KIE H K+L ++++ MV +T K G G Sbjct: 183 KDRLKLEKEREIEREREREKIEREKSHEKQLG-DADREMVIDQTDKEIAGDG 233 >At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula] Length = 263 Score = 28.7 bits (61), Expect = 4.9 Identities = 14/55 (25%), Positives = 30/55 (54%) Frame = +2 Query: 557 LFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSE 721 + AT G+L++++ + NK + +R+D DK ++ L+ V ++ NS+ Sbjct: 197 MVATPLGILQLILYFKYKNKKDLAPTTMVITKRNDHDDKNKATLEFVVDVDRNSD 251 >At3g04670.1 68416.m00500 WRKY family transcription factor similar to elicitor response element binding protein WRKY3 isolog GB:AAB63078 [Arabidopsis thaliana] Length = 330 Score = 28.7 bits (61), Expect = 4.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 722 FRCLYSVFLHVLKQIQFCRANHHARLQFEGAATRCF 615 FR Y + +H +QI + R+N L+F+G+ + C+ Sbjct: 141 FRAPYQL-IHNHQQIAYSRSNSGVNLKFDGSGSSCY 175 >At1g49560.1 68414.m05557 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain Length = 333 Score = 28.7 bits (61), Expect = 4.9 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = +2 Query: 632 HLQTEG-ERDDLRDKIESVLKHVKKLNTNSEK 724 H+Q EG D+++ ++ H++K N+N+EK Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEK 257 >At1g42710.1 68414.m04932 hypothetical protein Length = 206 Score = 28.3 bits (60), Expect = 6.4 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Frame = +2 Query: 611 NKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFM-VTH--ETFKNDVGTGLSSL 781 NK N L ++ GE++D +++ V + V K T E+F+ V H ET V + + L Sbjct: 101 NKGNFLELVKYTGEQNDATEQMAVVFRFVDKSGTVKERFIEVVHVKETSSASVKSAIDDL 160 >At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly identical to acyl-activating enzyme 18 [Arabidopsis thaliana] GI:29893268; similar to acetyl-CoA synthetase [SP|P27095] from Methanothrix soehngenii; contains Pfam AMP-binding enzyme domain PF00501l; identical to cDNA acyl-activating enzyme 18 (At1g55320) GI: 29893267 Length = 725 Score = 27.9 bits (59), Expect = 8.5 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +3 Query: 30 IQTWTRSRCSIGRTWTGIFFVTLTNK 107 ++TW R+ C G WT I F T + Sbjct: 452 VKTWKRTNCMEGLNWTKIKFFATTGE 477 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,796,816 Number of Sequences: 28952 Number of extensions: 304990 Number of successful extensions: 866 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 841 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 866 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1853336000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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