Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120161.Seq
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    26   0.36 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.9  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.4  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 325 NFTLLHCRHTNFPCFYYTIFAQTNSNGSFLSLLE 224
           NF +LHC +T + C Y  I   T S  S + L++
Sbjct: 151 NF-MLHCNNTTWRCLYRWIVLYTLSKMSQVMLIQ 183


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 216  WYHLVVSQHNARSHGILG*EF 154
            WYHL V+ HN     +   EF
Sbjct: 1559 WYHLRVTAHNNAGFNVAEYEF 1579



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 398  TLQFEIEMIDWRLEDLSPTKNKGILRHIL 484
            T+ ++ E  DW    + PT  K  L  +L
Sbjct: 1430 TIHYKPEFGDWETVQIGPTVEKYTLEKLL 1458


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 289 PCFYYTIFAQTNSNGSFL 236
           PC Y T F+   S GSF+
Sbjct: 33  PCVYLTSFSVVLSLGSFI 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,711
Number of Sequences: 336
Number of extensions: 4543
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)