Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120161.Seq
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    58   1e-09
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    43   4e-05
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    34   0.018
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    28   1.2  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   4.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   4.8  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   8.3  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +2

Query: 254 IC-LGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMI 424
           +C +G   +I  W  GVP M  GE   LT  P+Y YG  G P  IPPN+TL F++E++
Sbjct: 48  VCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105



 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +3

Query: 114 GVLKRITREGEGNETPNQGCHVSVHYVGTLLDGTKFDSSRDRNEPF 251
           GV K++   G G + P  G  +++HY GTL +G KFDSS DR  PF
Sbjct: 2   GVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPF 47


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +2

Query: 260 LGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMI 424
           LG+  VI  W +GV  M++G    +T     AYG + S P IP N+TL FE++++
Sbjct: 305 LGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYG-NQSIPGIPKNSTLVFEVKLV 358


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +2

Query: 260 LGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMI 424
           LG + VI+ W +G+  M+ G    +      AYG S   P IP N+ L F+++++
Sbjct: 306 LGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYG-SKRLPGIPANSDLVFDVKLL 359


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 162 NQGCHVSVHYVGTLLDGTKFDSSRDRNEPFEFV 260
           N    + VH V    + +K+  SR  NEP EF+
Sbjct: 24  NDNASLQVHNVSKSPEYSKYSYSRKNNEPIEFI 56


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 308 MKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDWRLEDLSPTKNKGILRHILE 487
           +KK  +    C P      S SP     N++   +     WRL  L P + + ++ H+LE
Sbjct: 537 IKKQRLVEQGCEPIRKTDESHSPNSKTDNSSTHKQELYGPWRLLRLLPRETRAVIAHMLE 596


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 274 TIFAQTNSNGSFLSLLESNLVPSSSVPT*CTLTWHPWLGVSLPSPSLVI 128
           T+    +S  SF ++  ++++PSSS  T  T T  P+   S   PS VI
Sbjct: 188 TLPPPASSTSSFSTITNTSMIPSSSSFT--TTTGSPYYNTSSFLPSSVI 234


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 484 EDMAQYAFVLGRTKIFQSPINHFNLKLQCCIWRDFWW 374
           + +A++  +LG+T +F    +H  L  Q  + +  W+
Sbjct: 157 DSLARWNRMLGKTVLFLGGFDHAGLSTQSVVEKKLWY 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,020
Number of Sequences: 5004
Number of extensions: 76248
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)