Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120161.Seq
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_42625| Best HMM Match : FKBP_C (HMM E-Value=0.0058) 55 5e-08
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 52 5e-07
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9) 37 0.014
SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05) 30 1.7
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.1
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 29 5.1
SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 29 5.1
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 29 5.1
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 29 5.1
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.1
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.1
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 29 5.1
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.1
SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.1
SB_39634| Best HMM Match : Kinesin (HMM E-Value=9.9e-39) 28 6.7
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_55919| Best HMM Match : DUF1106 (HMM E-Value=6.2) 28 8.9
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/61 (54%), Positives = 37/61 (60%)
Frame = +3
Query: 78 DQGVDITKNGDRGVLKRITREGEGNETPNQGCHVSVHYVGTLLDGTKFDSSRDRNEPFEF 257
+ GVDIT D GV KRI EG G E N GC V V YVG L+G +FDS+ PFEF
Sbjct: 861 EYGVDITPKKDGGVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEF 919
Query: 258 V 260
V
Sbjct: 920 V 920
>SB_42625| Best HMM Match : FKBP_C (HMM E-Value=0.0058)
Length = 84
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 559 DSKIFDQRTVTFSLGEGTEHNICEGIERALEKFLKDEKSRLIIQP-KYAFKSEG 717
D K+F++R V F+ GEGTE + EG+E A+ EKS++ IQP KY EG
Sbjct: 8 DGKVFEEREVEFTFGEGTEAGLLEGVEEAIGNMTNKEKSKIFIQPGKYGVGPEG 61
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +2
Query: 242 RTVRICLGKDGVIEAWKIGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEM 421
+T LGK VI+ W+ G+ M GE LT P AYG +G+ IPP+ATL ++E+
Sbjct: 70 KTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVEL 129
Query: 422 ID 427
++
Sbjct: 130 VE 131
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 168 GCHVSVHYVGTLLDGTKFDSSRDRNEPFEFVWAK 269
G +S+HY G L +G KFDSS DR + F+F K
Sbjct: 45 GDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGK 78
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 168 GCHVSVHYVGTLLDGTKFDSSRDRN---EPFEF 257
G HV VHY G + DG+ FD++RD +PFEF
Sbjct: 118 GDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEF 150
>SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9)
Length = 110
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 293 IGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDW 430
IGV TM+KGE+ EY + G P++ P AT+ +E+E++ +
Sbjct: 8 IGVSTMRKGELSRFLFDKEYVFKDLGCEPRV-PGATVMWEVELLSF 52
>SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)
Length = 651
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 303 GTPIFHASITPSLPKQIRTVRFCPCWNQTWYHLVVSQHNARSHGILG 163
G P+ A TPSLP ++ C ++ W L V Q + HG LG
Sbjct: 599 GYPLHAALATPSLPT---CYQYRKCRHRNWRTLPVMQSGPQEHGHLG 642
>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1732
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/79 (20%), Positives = 35/79 (44%)
Frame = +2
Query: 266 KDGVIEAWKIGVPTMKKGEVCILTCAPEYAYGASGSPPKIPPNATLQFEIEMIDWRLEDL 445
+D +++ +K KK C++ E S +PP + P+ F + D + +
Sbjct: 626 EDPILDIFKYKKKERKKNRFCVIPPFRECPRKLSSNPPALDPHTLDVFTPSIADADIAGM 685
Query: 446 SPTKNKGILRHILEAGTGL 502
+ T++ G+ + GT +
Sbjct: 686 TRTRDAGLPEANMVMGTAI 704
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 811 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 839
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 117 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 145
>SB_19328| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 295
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 213 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 241
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 103 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 131
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 349 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 377
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 533 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 561
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 323 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 351
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 20 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 48
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 566 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 594
>SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 719
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 525 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 553
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 408 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 436
>SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 546
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 310 EEG*SLHSDLCS*ICLRSKWQPTKNPSKC 396
E+G L DL +SKWQ NPSKC
Sbjct: 341 EDGDQLQEDLKRLEMWQSKWQMVFNPSKC 369
>SB_39634| Best HMM Match : Kinesin (HMM E-Value=9.9e-39)
Length = 244
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 505 QSNDGALVTVELEGRLQGDSKIFDQRTVTFSLGEGTEHNICEGIERALEKFLKDEKSRLI 684
++N GA +E+EG+ ++I++ + + GEG N + + DE+SR
Sbjct: 17 ENNMGAKTIIEMEGK---KTRIYNVKGTNVT-GEGERKNYVKDFSFDYSYWSVDERSRHF 72
Query: 685 IQPKYAFKSEG 717
+ + FK G
Sbjct: 73 VNQERVFKDLG 83
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 443 DLPISNQSFQSQTAMLHLEGFLVGCHLLRRHIQEHKSE 330
DL S+ + QS T LEG + GC L + E + E
Sbjct: 5920 DLSQSSSAVQSTTLESQLEGLMQGCGRLEGEVAEKQEE 5957
>SB_55919| Best HMM Match : DUF1106 (HMM E-Value=6.2)
Length = 276
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 51 DLKNKIMTVDQGVDITKNGDRGVLKRITREGEGNETPNQG 170
D++ + V + + + DRG++ R REG E P G
Sbjct: 21 DVEEDYLLVADTLGVNPSKDRGIVARYVREGRIEERPRGG 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,104,578
Number of Sequences: 59808
Number of extensions: 563724
Number of successful extensions: 1529
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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