Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120161.Seq
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.55 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.9  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 219  TWYHLVVSQHNARSHGILG*EF 154
            TWYHL V+ HN     +   EF
Sbjct: 1528 TWYHLRVTAHNNAGFAVAEYEF 1549



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 479 ILEAGTGLDSPTMVHWSQLN*KGDCKVIAKYSIREQL 589
           +L+     + P  + W+  N + D K  ++Y+IRE++
Sbjct: 795 VLQCEAQGEKPIGILWNMNNKRLDPKSDSRYTIREEI 831


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 105 HSL*YRLPDPQSLFYFSNQTFFKN 34
           H+L Y  P  ++L+Y + ++  K+
Sbjct: 262 HNLYYNSPSSENLYYVNTESLMKS 285


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 395 HLEGFLVGCHLLRRHIQEHKSECKLH 318
           + E   V    L+ HI+ H   CK H
Sbjct: 21  YCEKVYVSLGALKMHIRTHTLPCKCH 46


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 665 SFKNFSRALSIPSHILCSV 609
           SF NF + ++  S+++C V
Sbjct: 46  SFTNFDKGINWRSYVVCDV 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,023
Number of Sequences: 438
Number of extensions: 5211
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)