Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120159.Seq
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    28   1.6  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.8  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   4.8  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   4.8  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   8.4  
SPCC338.06c |||heat shock protein Hsp20 family|Schizosaccharomyc...    25   8.4  

>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 174 RCEFSCWAVCWAPARRLIWQNYACRIKVEFYNKHDHKVDLFKRAEHV 314
           R +F  W +  AP   ++W+    RI  E +  HD K  L K  E V
Sbjct: 273 RVQFCQWTIAAAPGHPILWE-LVRRITDETWKLHDSK-KLSKNGESV 317


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 121 SNLFKERQDAQHKTFAKTNNVNERKL 44
           SN+ K+R+D + K   KT   NE +L
Sbjct: 73  SNIIKKRKDEERKGTLKTEQANEEEL 98


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -3

Query: 626 KASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQRLNLYNLDHIEMNVNFYELLF 447
           KA K+     RY+T  R  +  K   D+  R++L  +AQ  N YN     + V F     
Sbjct: 5   KAVKSSPYFSRYQTKYRRRREGK--TDYYARKRL--IAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 446 PLTLYNDNDNSDKTLSH 396
              + +   N D  L+H
Sbjct: 61  TCQIVSSRVNGDYVLAH 77


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -3

Query: 626 KASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQRLNLYNLDHIEMNVNFYELLF 447
           KA K+     RY+T  R  +  K   D+  R++L  +AQ  N YN     + V F     
Sbjct: 5   KAVKSSPYFSRYQTKYRRRREGK--TDYYARKRL--IAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 446 PLTLYNDNDNSDKTLSH 396
              + +   N D  L+H
Sbjct: 61  TCQIVSSRVNGDYVLAH 77


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 524 WQLAQRLNLYNLDHIEMNVNFYELLFPLTLYNDND 420
           WQ+ +  + YN  +   N  F++L   L  + DND
Sbjct: 168 WQITEFNSGYNYKNTVSNGAFFQLAARLARFTDND 202


>SPCC338.06c |||heat shock protein Hsp20 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +3

Query: 186 SCWAVCWAPARRLIWQNYACRIKVEF--YNKHDHKVDL 293
           S W  CW PA  L        + VE    +K + KVDL
Sbjct: 26  SAWLSCWGPALELRETEDTIEVDVEVPGIDKQNLKVDL 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,478
Number of Sequences: 5004
Number of extensions: 52662
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)