Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120159.Seq
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042...    31   1.2  
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    29   5.0  
04_03_0433 + 15878709-15878798,15879271-15879336,15880608-158807...    29   5.0  
10_01_0242 + 2534316-2535482                                           28   8.8  
04_04_1599 + 34700250-34700437,34700799-34700869,34701029-347010...    28   8.8  

>02_03_0201 +
           16302797-16302799,16303949-16304084,16304163-16304250,
           16305531-16305683,16306647-16306809,16306906-16307090,
           16307164-16307337,16308055-16308200,16308369-16308492,
           16308608-16308788,16309302-16309371,16310155-16310196,
           16310276-16310394,16310474-16310672,16311442-16311573,
           16312435-16312538,16312641-16312820,16314000-16314090,
           16314100-16314139,16314225-16314364,16314500-16314660,
           16314897-16315020,16315104-16315255
          Length = 968

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 503 NLYNLDHIEMNVNFYELLFPLTLYNDND 420
           ++Y L   ++++  +E++FPL  +NDND
Sbjct: 306 SMYQLMQPQIDIILFEIIFPLMCFNDND 333


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 422 DNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFNVFGPFKQ 291
           D   + LS  + +   L S YF  C K  + +R  F ++G   Q
Sbjct: 861 DGGSENLSSSVADSQTLMSLYFALCTKKHSLLRHVFAIYGSLPQ 904


>04_03_0433 +
           15878709-15878798,15879271-15879336,15880608-15880743,
           15880813-15880900,15881674-15881826,15882214-15882376,
           15882446-15882630,15882696-15882869,15883222-15883367,
           15883498-15883621,15883702-15883882,15884986-15885145,
           15885235-15885276,15885349-15885467,15885548-15885746,
           15886263-15886394,15887546-15887649,15887750-15887929,
           15888202-15888249
          Length = 829

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -3

Query: 503 NLYNLDHIEMNVNFYELLFPLTLYNDND 420
           ++Y L   ++++  +E++FPL  +ND+D
Sbjct: 357 SMYQLMQPQIDIILFEIIFPLMCFNDSD 384


>10_01_0242 + 2534316-2535482
          Length = 388

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 365 YWP-KICNLPIDEKAFCHCYHCHCTVSMETATRKNLHSFQYDRDCTGLA 508
           YWP K  ++   E A    YH  C     +  R+N+H  + +    GLA
Sbjct: 212 YWPLKSKHILAFELATSRLYHIECPPETHSVYRRNVHIMKAEDGGLGLA 260


>04_04_1599 +
           34700250-34700437,34700799-34700869,34701029-34701093,
           34701193-34701273,34701328-34701408,34701632-34701651,
           34701795-34701867
          Length = 192

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 491 LDHIEMNVNFYELLFPLTLYNDNDNSDKTLSHQLVNYIFLASNYFQN 351
           LDH E+ V +YEL+F   L    D   K   H L+  + LA +   N
Sbjct: 117 LDHSELQVLYYELIFADLL----DGFHKNWDHGLIAELTLAQSQLWN 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,205
Number of Sequences: 37544
Number of extensions: 282617
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)