Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120159.Seq
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58363| Best HMM Match : LETM1 (HMM E-Value=0) 31 1.3
SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008) 29 3.9
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_12482| Best HMM Match : TP2 (HMM E-Value=5.6) 29 5.1
SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 5.1
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0) 28 9.0
>SB_58363| Best HMM Match : LETM1 (HMM E-Value=0)
Length = 540
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = -1
Query: 727 KMSTTKKESKRRKLEDEDFLKLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCN 566
K++ K+ESK+RK E+E KA +++++ + + I V + K+ +EY N
Sbjct: 407 KIAEEKEESKKRKQEEEAERVRKAAAETRELLIYEAEAIAVDEEISKKDWEYVN 460
>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 234 NYACRIKVEFYNKHDHKVDLFKRAEHVK 317
+Y CR YN H K+D KR H+K
Sbjct: 144 SYKCRFHEYRYNDHIQKLDTLKRQSHIK 171
>SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 1/93 (1%)
Frame = -3
Query: 605 GHRRYETVVRILQLQKFFRDFTKRRQLWQLAQRLNLYNLDHIEMNVNFYELLFPLTLYND 426
GH + L + F F Q W L+ NL N N+Y P ++ D
Sbjct: 301 GHHLNPDDLGTLTYENNFDPFAPESQKWMLSLSKNLRNQTFFSKTKNYYPKT-PFEMFLD 359
Query: 425 NDNSDKTLSHQLVNYIF-LASNYFQNCAKNFNY 330
+ + L NY F F+NC K ++
Sbjct: 360 HAIQESCLE----NYTFPYPRAVFENCYKKLDF 388
>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
Length = 832
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = -3
Query: 632 QRKASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQRL 504
+R+A+K R+E ++R L+LQ+ + +RR+ Q+AQRL
Sbjct: 327 KRRAAKR--ARIRHEKLMRKLRLQQKMEEQRRRRRAHQIAQRL 367
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 213 ARRLIWQNYACRIKVEFYNKHDHK-VDLFKRAEHVKSFAHIVEVFSAVLKIVTGQKYVIY 389
A+RLI + R+ ++ NKH + ++ +EH++ AH + + V+ ++ + ++
Sbjct: 3211 AQRLIG---SLRLYIDKINKHKGEPIEKGLSSEHIERIAHDIAMHFPVIPVIRDLNHTVH 3267
Query: 390 QLMR 401
+L+R
Sbjct: 3268 ELVR 3271
>SB_12482| Best HMM Match : TP2 (HMM E-Value=5.6)
Length = 406
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -1
Query: 367 VTIFKTALKTSTICAKLLTCSARLNKSTLWSCLL*NSTFMRHA*FCQINRRAGAQ 203
VT + + L TS+ C RL++ CL+ +T + HA + NRR GAQ
Sbjct: 297 VTWWVSPLDTSSRCG----LRDRLSEPNALMCLMKTTTILPHAATAEDNRRLGAQ 347
>SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 752
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 42 CSLRSLTLLVFANVLCCASCLSLKRFEIVN 131
CS+R +T AN CC C+ K + ++
Sbjct: 514 CSIRQITAPAIANPTCCWQCVDCKHKQYIS 543
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 727 KMSTTKKESKRRKLEDEDFLKLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKN 557
+ S ++ ++ LE E KL + +KD EKLQ +I D +KR E N KN
Sbjct: 2305 RKSQLERVEEKLALEKEQNAKLSSRLDTKD---EKLQTLISECDSLKRQLEGVNEKN 2358
>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1273
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 383 NLPIDEKAFCHCYHCHCTVSMETATRKNLHSFQYD 487
++ ID+K +C+ H V +E T K LH F Y+
Sbjct: 440 SIVIDDKQYCNNSHGVNIVVLEMLTFKVLHVFSYE 474
>SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1236
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 404 AFCHCYHCHCTVSMETATRKNLHSFQYD 487
+FC+C CT E+ R++ HS +Y+
Sbjct: 492 SFCYCESNCCTSYKESCIRRSWHSLRYN 519
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,605
Number of Sequences: 59808
Number of extensions: 360026
Number of successful extensions: 1395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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