Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120159.Seq
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.      30   1.9  
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    28   7.8  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 709 KESKRRKLEDEDFL-KLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETL 542
           +E+K+RK E E  L + +A + +K+    +  K++ VTD     +E    KNS+E L
Sbjct: 68  EEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNSVENL 124


>U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical
           protein F56D2.2 protein.
          Length = 451

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +2

Query: 371 PKICNLPIDEKAFCHCYHC------HCTVSMETATRKNLHS-FQYDRDCTGLAFE 514
           PK C++ I++   CH  HC       C +  ET  +++ +  FQ D  C+G  FE
Sbjct: 340 PK-CSVSIEKNEGCHKMHCTKCDTYFCWLCSETLDKEDPYKHFQGDGSCSGRLFE 393


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 709 KESKRRKLEDEDFL-KLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETL 542
           +E+K+RK E E  L + +A + +K+    +  K++ VTD     +E    KNS+E L
Sbjct: 68  EEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNSVENL 124


>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
           protein B0464.2 protein.
          Length = 1150

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -1

Query: 730 LKMSTTKKESKRRKLEDEDFLKLKALEFSKDIV 632
           ++ +  K+E++++KLED   L+L  +E +KD++
Sbjct: 894 IEEARAKEEAEKQKLEDMKNLRLSFIEMTKDVL 926


>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 563 QKFFRDFTKRRQLWQLAQRLNLYNLDHIEMNVNFYELLFPLTLYNDNDNSDKTLSHQL 390
           + FFR        W++  R++L NLDHI+ +V          L ND+DN     + +L
Sbjct: 307 ETFFRYVPPVGGYWKIRDRVDLLNLDHIDDDV----------LANDSDNRKDAFTFEL 354


>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 563 QKFFRDFTKRRQLWQLAQRLNLYNLDHIEMNVNFYELLFPLTLYNDNDNSDKTLSHQL 390
           + FFR        W++  R++L NLDHI+ +V          L ND+DN     + +L
Sbjct: 307 ETFFRYVPPVGGYWKIRDRVDLLNLDHIDDDV----------LANDSDNRKDAFTFEL 354


>U64833-4|AAB04817.1|  380|Caenorhabditis elegans Hypothetical
           protein B0507.7 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 712 KKESKRRKLEDEDFLKLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCN 566
           K   +++KLE +D  K    +  KD+ N K+ K+  +TD  +   E  N
Sbjct: 134 KNSQEKKKLEKQDPNKFIIRQMDKDLKN-KINKLRKITDETEHKLELAN 181


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 440 TLYNDNDNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFNVFGP 300
           T  N+NDN +  LS   + Y+   +N  Q    N     +T N   P
Sbjct: 63  TARNENDNQNHNLSPSDIRYLETITNLSQQALNNVKSTIDTINEVEP 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,517
Number of Sequences: 27780
Number of extensions: 294223
Number of successful extensions: 1070
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)