Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120159.Seq
(733 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 26 0.32
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 25 0.56
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 25 0.56
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 3.0
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 22 5.2
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 5.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 5.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 5.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 9.0
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 21 9.0
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 26.2 bits (55), Expect = 0.32
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 644 QRHCQRKASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQR 507
+R C R S+ Y RRY+ + + +K R+ T RR+ + +R
Sbjct: 250 ERSCSRDRSREYKKDRRYDQLHNV--EEKHLRERTSRRRYSRSRER 293
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.56
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Frame = -3
Query: 644 QRHCQRKASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQR-LNLYNLDHIEMNV 468
+R C R ++ Y RRYE + + +K + T R++ + +R N Y N
Sbjct: 1 ERSCSRDRNREYRKDRRYEKLHN--EKEKLLEERTNRKRNSRSREREQNSYK------NE 52
Query: 467 NFYELLFPLTLYNDNDNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFN 312
Y + D +++ S + L++N N +NY +N
Sbjct: 53 REYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYN 104
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.56
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Frame = -3
Query: 644 QRHCQRKASKNYCGHRRYETVVRILQLQKFFRDFTKRRQLWQLAQR-LNLYNLDHIEMNV 468
+R C R ++ Y RRYE + + +K + T R++ + +R N Y N
Sbjct: 1 ERSCSRDRNREYRKDRRYEKLHN--EKEKLLEERTNRKRNSRSREREQNSYK------NE 52
Query: 467 NFYELLFPLTLYNDNDNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFN 312
Y + D +++ S + L++N N +NY +N
Sbjct: 53 REYRKYRETSKERSRDRAERERSREPKIISSLSNNTIHNNNYKYNYNNNNYN 104
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.0 bits (47), Expect = 3.0
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Frame = -3
Query: 644 QRHCQRKASKNYCGH-RRYETVVRILQLQKFFRDFTKRRQLWQLAQR-LNLYNLDHIEMN 471
+R C R ++ Y RRYE + + +K + T R++ + +R N Y N
Sbjct: 223 ERSCSRDRNREYKEKDRRYEKLHN--EKEKLLEERTSRKRYSRSREREQNSYK------N 274
Query: 470 VNFYELLFPLTLYNDNDNSDKTLSHQ--LVNYIFLASNYFQNCAKNFNYMRETFNV 309
Y + D ++ S + +++ + + NY N N NY + +N+
Sbjct: 275 EREYRKYRETSKERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNI 330
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 22.2 bits (45), Expect = 5.2
Identities = 7/28 (25%), Positives = 15/28 (53%)
Frame = +3
Query: 204 WAPARRLIWQNYACRIKVEFYNKHDHKV 287
W ++ + CR K+ ++ HD+K+
Sbjct: 135 WILDTGILGEKQICRPKIHVFSLHDNKL 162
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 5.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 389 VNYIFLASNYFQNCAKNFNYM 327
++YIFL N FQ+ +++F +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 5.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 389 VNYIFLASNYFQNCAKNFNYM 327
++YIFL N FQ+ +++F +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 5.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 389 VNYIFLASNYFQNCAKNFNYM 327
++YIFL N FQ+ +++F +
Sbjct: 179 LDYIFLIFNQFQDFSESFQIL 199
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.4 bits (43), Expect = 9.0
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -1
Query: 385 ITYFWPVTIFKTAL 344
I +WP+ +FK A+
Sbjct: 378 IILYWPILLFKKAM 391
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 449 FPLTLYNDNDNSDKTLS 399
F L +YN++DNS + L+
Sbjct: 209 FALIIYNNSDNSFQRLT 225
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,132
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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