Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120158X.Seq
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    26   3.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.2  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   4.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   9.6  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   9.6  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   9.6  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 332 AIVNSDDKIQKTYELAEFDLKNLSSLESYETLKIKL 439
           A++ + DK+Q      E    N  ++E  ETL+ KL
Sbjct: 126 AMIAAQDKMQALQTQVEASTNNAKAVEELETLRTKL 161


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 532 AIAECLLCSKYFQQRLGHFQGAEHSHVFAERQF 434
           A+  C LC KY  +   H+Q    S +  +RQ+
Sbjct: 703 AVGHCKLCGKYSNELRAHYQDCVSSTI--DRQY 733


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 48  NSKHVFDHFGCSSNYCFNNYV 110
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 541 TTAAIAECLLCSKYFQQR 488
           T  ++  CL+C +YFQ R
Sbjct: 82  TNLSVYACLVCGRYFQGR 99


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = -2

Query: 480 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWILSSLFTIAVTVRTLLHLT 301
           + R+LSIA +LLS + + R+    +    +  N+  S V        T +V V+  L + 
Sbjct: 14  LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69

Query: 300 RFIFIHLSTTF 268
           R+ +     T+
Sbjct: 70  RYYYEQEDVTY 80


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 388 IKFGQFVGFLDLVIAVYNC 332
           +KFG+  GFL+  I  YNC
Sbjct: 422 LKFGEGDGFLNYYIYNYNC 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,647
Number of Sequences: 5004
Number of extensions: 30964
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)