Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120158X.Seq
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z73423-4|CAH60746.1|  307|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z73423-3|CAA97775.2|  327|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    27   8.8  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    27   8.8  

>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 18  CAVRKLFKQANSKHVFDHFGCSSNYCFNN 104
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 332 AIVNSDDKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 469
           +I++S   ++   E+A  D +NLS L   ET+  K +    M ML+
Sbjct: 246 SILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTMLN 291


>Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical
           protein F01D5.9 protein.
          Length = 508

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 468 LSIAMYLLSANLIFRVS*LSKLLRFFK 388
           + IA+YLL+  +I+ V  LSK+L+F K
Sbjct: 1   MGIAVYLLALVVIYVVFNLSKILKFVK 27


>Z73423-4|CAH60746.1|  307|Caenorhabditis elegans Hypothetical
           protein C03A3.1b protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 330 VTVRTLLHLTRFIFIHLSTTFAFEAFHK 247
           +TV +  H+T F+     T+F F AFH+
Sbjct: 256 LTVYSANHITAFMLSGFFTSFLFSAFHR 283


>Z73423-3|CAA97775.2|  327|Caenorhabditis elegans Hypothetical
           protein C03A3.1a protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 330 VTVRTLLHLTRFIFIHLSTTFAFEAFHK 247
           +TV +  H+T F+     T+F F AFH+
Sbjct: 276 LTVYSANHITAFMLSGFFTSFLFSAFHR 303


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
           protein R13G10.1 protein.
          Length = 1469

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 257 ASKANVVDKCIKMKRVKCNKVRT--VTAIVNSDDKIQKTYELAEFDLKNLSSLESYETLK 430
           + K+NV+D  + +   K  K+RT  ++A++NS    +       F +     +E+Y+  +
Sbjct: 126 SGKSNVIDALLFVFGFKAGKIRTKKLSALINSGGNYESCSVTIMFQMVKDMPVENYDKYE 185

Query: 431 I 433
           +
Sbjct: 186 V 186


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
           condensation protein protein.
          Length = 1469

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 257 ASKANVVDKCIKMKRVKCNKVRT--VTAIVNSDDKIQKTYELAEFDLKNLSSLESYETLK 430
           + K+NV+D  + +   K  K+RT  ++A++NS    +       F +     +E+Y+  +
Sbjct: 126 SGKSNVIDALLFVFGFKAGKIRTKKLSALINSGGNYESCSVTIMFQMVKDMPVENYDKYE 185

Query: 431 I 433
           +
Sbjct: 186 V 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,522,511
Number of Sequences: 27780
Number of extensions: 178096
Number of successful extensions: 499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)