Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120158X.Seq
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p...    31   0.50 
At5g02920.1 68418.m00235 F-box family protein low similarity to ...    31   0.66 
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    30   1.2  
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    29   1.5  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    29   1.5  
At2g31890.1 68415.m03896 expressed protein                             27   6.2  
At2g28780.1 68415.m03499 expressed protein                             27   6.2  

>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 278

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +2

Query: 278 DKCIKMKRVKC-NKVRTVTAIVNSDDKIQKTYELAEFDLKNLSS----LESYETLKIKLA 442
           D  IK K +   +K +T+T +  S+D I      +E +L+N+      L+ Y+ LK++  
Sbjct: 42  DLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVELRNILMTHVILDYYDELKLQ-G 100

Query: 443 LSKYMAMLSTLEMTQPLLE 499
           + +   ML+TL  T  L E
Sbjct: 101 MREKSIMLTTLYQTTGLGE 119


>At5g02920.1 68418.m00235 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 345

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 462 IAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWILSSLFTIAVTVRTLLHLTRFIFIH 283
           I  ++   NL+ R S LSK  R   S + +    W++ S   I  T+ +    ++    H
Sbjct: 41  ILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTLASYT-ASKITSFH 99

Query: 282 LSTTFAFEAFH 250
           L T++++EA H
Sbjct: 100 LCTSYSYEAGH 110


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein
           (Atm) identical to ataxia-telangiectasia mutated protein
           (Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam
           profile PF00855: PWWP domain; contains GA donor splice
           site at exon 73
          Length = 3255

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +2

Query: 245 PL*NASKANVVDKCIKMKRVKCNKVRTVTAIVNSDDKIQKTYELAEFDLKNLSSLESYET 424
           PL   S A+   K  +++  K + + ++  +  +D + QKT+EL   +  N+ SL    T
Sbjct: 420 PLNGVSVADTEQKTFELQISKKSNIESLNGVSVADTE-QKTFELQILEKSNIESLNGVST 478

Query: 425 LKIKLALSK 451
             I    SK
Sbjct: 479 PNIDHEASK 487


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 404 SLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRTKQTLG 526
           S ES    + K  LS+  A++S    TQPL  + RT  TLG
Sbjct: 458 SPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLG 498


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 404 SLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRTKQTLG 526
           S ES    + K  LS+  A++S    TQPL  + RT  TLG
Sbjct: 458 SPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLG 498


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 516 CFVLNISNSGWVISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSAN 373
           C    ISN  W +S++    +YL   + +  V+  SK+  F   N AN
Sbjct: 334 CSAQGISNISWALSKIGGELLYLTEMDRVAEVA-TSKVGEFNSQNVAN 380


>At2g28780.1 68415.m03499 expressed protein
          Length = 796

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 239 LIPL*NASKANVVDKCIKMKRVKCNKVRTVTAIVNSDDKIQKTYELAEFDLKNLSSLESY 418
           L+PL   +   V   C ++ +    +V+       SDD +  T  +++  +   SS + Y
Sbjct: 169 LVPLPRLATCEVKQSCKELGQNVTTRVKLYMKAFCSDDSMSATASVSQARVLARSSSKLY 228

Query: 419 ETLK 430
           +TLK
Sbjct: 229 QTLK 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,755,689
Number of Sequences: 28952
Number of extensions: 157731
Number of successful extensions: 427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)