Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120155.Seq
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015A3C97 Cluster: UPI00015A3C97 related cluster; n...    38   0.37 
UniRef50_Q4J9V6 Cluster: Conserved membrane protein; n=1; Sulfol...    34   3.4  

>UniRef50_UPI00015A3C97 Cluster: UPI00015A3C97 related cluster; n=2;
           Euteleostomi|Rep: UPI00015A3C97 UniRef100 entry - Danio
           rerio
          Length = 411

 Score = 37.5 bits (83), Expect = 0.37
 Identities = 21/84 (25%), Positives = 42/84 (50%)
 Frame = -2

Query: 407 TFFLLSFGTKFLSTSYAYFRIIFLHYNKNITSASGSVTNLNFHMSQQNM*ITGIEYKINL 228
           TF  L++    L+ +  +    F H N ++T  + +VT+LN+  +  N  +T + Y +  
Sbjct: 203 TFTHLNYSVTHLNYTVTHLNYTFTHLNYSVTHLNYTVTHLNYTFTHLNYTVTHLNYTVTH 262

Query: 227 ADILLLYT*NYFETLCFLNFTLQY 156
            +  + +  NY  T+  LN+T  +
Sbjct: 263 LNYTVTHL-NY--TVTHLNYTFTH 283



 Score = 37.1 bits (82), Expect = 0.49
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
 Frame = -2

Query: 395 LSFGTKFLSTSYAYFRIIFLHYNKNITSASGSVTNLNFHMSQQNM*ITGIEYKI---NLA 225
           L++    L+ +  +    F H N ++T  + +VT+LN+  +  N  +T + Y +   N  
Sbjct: 186 LNYTVTHLNYTVTHLNYTFTHLNYSVTHLNYTVTHLNYTFTHLNYSVTHLNYTVTHLNYT 245

Query: 224 DILLLYT*NYFE-TLCFLNFTLQY-R**VFHLDNY*IAYSFLSYSIDRIS 81
              L YT  +   T+  LN+T+ +    V HL NY   ++ L+YS+  ++
Sbjct: 246 FTHLNYTVTHLNYTVTHLNYTVTHLNYTVTHL-NY--TFTHLNYSVTHLN 292



 Score = 33.1 bits (72), Expect = 8.0
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
 Frame = -2

Query: 395 LSFGTKFLSTSYAYFRIIFLHYNKNITSASGSVTNLNFHMSQQNM*ITGIEYKI---NLA 225
           L++    L+ +  +      H N  +T  + +VT+LN+ ++  N   T + Y +   N  
Sbjct: 109 LNYTNTHLNYTVTHLNYTNTHLNYTVTHLNYTVTHLNYSVTHLNYTNTHLNYTVTHLNYT 168

Query: 224 DILLLYT*NYFE-TLCFLNFTLQY-R**VFHLDNY*IAYSFLSYSIDRIS 81
           +  L YT  +   T+  LN+T+ +    V HL NY   ++ L+YS+  ++
Sbjct: 169 NTHLNYTVTHLNYTVTHLNYTVTHLNYTVTHL-NY--TFTHLNYSVTHLN 215


>UniRef50_Q4J9V6 Cluster: Conserved membrane protein; n=1;
           Sulfolobus acidocaldarius|Rep: Conserved membrane
           protein - Sulfolobus acidocaldarius
          Length = 205

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -1

Query: 519 VLVFPFLNYCGYI-ATRHHRHFYRIYPSIKYLLK*KCPNIFSVKFRHQILIYIIRVF*NY 343
           +LV+  L +  Y    +  R FY+IYP I Y+L+ K    F + F   IL+ I+ ++  Y
Sbjct: 66  ILVYMSLTFVFYHRVAKIRRKFYKIYPEINYMLRGK---FFILYFMIGILLTILIIYSYY 122

Query: 342 IS 337
           +S
Sbjct: 123 VS 124


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,751,226
Number of Sequences: 1657284
Number of extensions: 13594116
Number of successful extensions: 26515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26474
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)