Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120155.Seq
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    28   1.3  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    27   2.3  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.2  

>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +1

Query: 436 DRGINSIKMPMVSCSNIATVV*KWKYKYIQHVSFILISCAMFYKLCIATAYVSSSALFPA 615
           DR     K+P++ C   A  V ++    IQ +   L  C  F   CI+  Y+    LF A
Sbjct: 277 DRLFTEAKIPLIICF-FALFVVRFFAITIQSIHLGLWFCFFFLTACISALYI----LFGA 331

Query: 616 QAVIPSDLNS 645
              +PS L +
Sbjct: 332 FVALPSTLRA 341


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 540 NKRNMLNVLVFPFLNYCGYIATRHHRHFYRIYPSIKYLLK*KCPN 406
           N    L+ L     +  G +  +HHR  +R Y ++KY+ + K PN
Sbjct: 8   NNLPTLDTLQMVISDVDGTLLDKHHRFHFRTYRAMKYIRE-KYPN 51


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 410 QTFFLLSFGTKFLSTSYAYFRIIFLHYNKNITSASGSVTNL 288
           Q F L SFG    +  +  +RI+++ + KN +  +  + NL
Sbjct: 228 QLFHLYSFGIPGNTKEFLAYRILYMLFTKNRSEMNSLLANL 268


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 676 VMSQLLVLYNGYSNRKGSLLALEIGRMMIHTQ 581
           + + L+V+    ++ K   L L++GR ++HTQ
Sbjct: 672 LQAPLIVVREECTDLKSPTLFLDVGRALVHTQ 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,701
Number of Sequences: 5004
Number of extensions: 64903
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)