Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120155.Seq
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59295| Best HMM Match : SET (HMM E-Value=0)                         28   9.7  
SB_40706| Best HMM Match : Extensin_2 (HMM E-Value=7.9)                28   9.7  

>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 685 KVSKPVNRISEIPNWSAHNYRASPLELLCE 774
           K+  P NR   I  +SAH  +A P E +C+
Sbjct: 496 KIKHPTNRTELIIFFSAHKKKAQPTEGVCD 525


>SB_40706| Best HMM Match : Extensin_2 (HMM E-Value=7.9)
          Length = 301

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 486 YIATRHHRHFYRIYPSIKYLLK*KCPNIFSVKFRHQILIY 367
           YI   HH   Y+ YPS+ ++ +     ++ +K  H  L+Y
Sbjct: 184 YIKDTHHYPLYQGYPSLPFISRIPITTLY-IKDTHHYLLY 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,281,618
Number of Sequences: 59808
Number of extensions: 448987
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)