Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120155.Seq
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin s...    31   0.92 
Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine re...    28   8.6  

>U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin
           synthase protein 2 protein.
          Length = 335

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 309 FWVCY*FELSYVSTKYVNNWN 247
           FW+CY FE      K VN WN
Sbjct: 294 FWLCYWFESDVADGKLVNKWN 314


>Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical
           protein T20F10.5 protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 460 MPMVSCSNIATVV*KWKYKYIQHVSFILISCAMFYKLC-IATAYVSSSAL 606
           + +V    + +VV  W+ + ++ +  +++ C +F K C +A AY +  A+
Sbjct: 9   LELVKKWGVLSVVSSWQDRLLRDICALIVECVLFDKTCAVAPAYFTLIAM 58


>AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine
           receptor, class w protein66 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 217 CYFTHKITSKHSAFLTLHYNIGDKYFTWIIIKLHIHF 107
           CY       K S F  ++Y++ D +  ++ I   +HF
Sbjct: 299 CYILEGTLPKRSVFRDINYDLMDAFTIFVAINASVHF 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,992
Number of Sequences: 27780
Number of extensions: 355583
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)