Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120155.Seq
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein ...    29   4.5  
At5g28970.1 68418.m03584 Ulp1 protease family protein contains P...    28   7.9  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    28   7.9  

>At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein
           contains Pfam domain PF01363: FYVE zinc finger
          Length = 485

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 711 DPVNWFGDFDTL*CLNCLYCITAIQIGRDHC 619
           +P  W  D     C+ C    TAI  GR HC
Sbjct: 168 EPPEWLPDSLASTCMQCSTPFTAITCGRHHC 198


>At5g28970.1 68418.m03584 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 523  QHVSFILISCAM-FYKLCIATAYVSSSALFPAQAVIPSDLNSRYTIQAIETSQGIKVSKP 699
            +HV       AM  YK C+   Y S+ A+FP +  IPS + ++  I +     G+   KP
Sbjct: 1030 KHVDAFRRQYAMDIYKQCVCPLYSSNVAVFP-EIFIPSPILAK--IVSYVAKDGVDALKP 1086

Query: 700  V 702
            +
Sbjct: 1087 L 1087


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +1

Query: 505 WKYKYIQHVSFILISCAMFYKLCIATAYVSSSALFPAQAVIPSDLNSRYTIQAIETS 675
           W YK+    S+  ISC    K  + T  + +S L  +   IPSDL S  T+Q+++ S
Sbjct: 47  WNYKHESPCSWRGISCNNDSK--VLTLSLPNSQLLGS---IPSDLGSLLTLQSLDLS 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,587
Number of Sequences: 28952
Number of extensions: 302708
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)