Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120154.Seq
         (515 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.6  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   2.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   3.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -3

Query: 390 FRAHPLNDSPALLHPTSDLRPG--SEPVQSRGVPAVNTTTRHAAPPRDARLT-GRRGDSR 220
           F  H     P  L P  ++     S P+ +  V    TT    +PP + RLT  +   S+
Sbjct: 59  FTHHKAPIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDASSK 118

Query: 219 RPTTSVSA 196
           R  T+ ++
Sbjct: 119 RIXTAFTS 126


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 242 VSRASRGGAACLVVVLTAGTPLL 310
           + R+ R GAA  +V  TAGT ++
Sbjct: 275 IERSLREGAAPFMVSATAGTTVI 297


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 158 RRRINRVKFCKL*MCLFIWLKNNGYQ 81
           +R+ NR ++C+   CL + +K    Q
Sbjct: 132 KRQRNRCQYCRYQKCLNMGMKREAVQ 157


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 137 KFCKL*MCLFIWLKNNGYQY 78
           K C+L  CL + +  +G +Y
Sbjct: 59  KACRLRKCLLVGMSKSGSRY 78


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 221 DDQRRQSPRMPTP 183
           D QRR  P+ P P
Sbjct: 322 DHQRRNEPKRPRP 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,498
Number of Sequences: 336
Number of extensions: 2503
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)