Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120154.Seq
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    35   0.006
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   1.7  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   2.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    25   6.7  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   6.7  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   8.9  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   8.9  

>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 29/85 (34%), Positives = 38/85 (44%)
 Frame = -3

Query: 453 RAGYVRLNDLQVLRADRGPKDFRAHPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTR 274
           RAG+V   +    R  +GP   R+   N S +   P+    P S      GV    TTT 
Sbjct: 483 RAGFVAALES---RLQKGPL-MRSFVPNKSKS---PSGTKSPASGETSEAGVKETETTTS 535

Query: 273 HAAPPRDARLTGRRGDSRRPTTSVS 199
             +   DAR +  RG  RRP TSV+
Sbjct: 536 SESALPDARKSRARGPVRRPPTSVN 560


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 321 EPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVSADAD 187
           +P  S+   A NTT+R   PP   R      ++   TTS + DA+
Sbjct: 445 KPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDAN 489


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -3

Query: 324 SEPVQSRGVPAVNTTT----RHAAPPRDARLTGRRGDSRRPTTSVSADADPT 181
           S PV    +P + TTT    R  APP  +  + R     RPT+     + PT
Sbjct: 448 SPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVSPQPSSPT 499


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 378  PLNDSPALLHPTSDLRPGSEPV-QSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSV 202
            P + +P +  P++ L P   P  ++  VPA ++     + PR +  +     S  PT+S 
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSS 1271

Query: 201  SADADP 184
             A A P
Sbjct: 1272 MASAAP 1277


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 181 GGVGIRGD*RRWSSTIASTTRQSGVSGW 264
           GG G RGD  +W      TT      GW
Sbjct: 124 GGYGDRGDESQWKKANPKTTTYVIFEGW 151


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 177 TRW-GRHPRRLTSLVVDYRLDDPSVGRL 257
           TRW  R+  RL     DYR +DPS  RL
Sbjct: 542 TRWIDRNLIRLCQHFADYRKEDPSSFRL 569


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 378 PLNDSPALLHPTSDLRPGSEPVQSRGVPA 292
           P N++PA    ++  RP S P  S  VPA
Sbjct: 258 PANETPASSSSSAKARPVSVPDMSSPVPA 286


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 133 FANCKCVYLFGLKIMDISTLYIC 65
           F+   C Y F L I+D S +Y+C
Sbjct: 138 FSRLTCAY-FVLSILDASLIYLC 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,357
Number of Sequences: 5004
Number of extensions: 38117
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)