Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120154.Seq
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 36 0.026
09_03_0006 + 11426346-11426420,11426733-11427452 33 0.18
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 32 0.31
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 32 0.31
10_08_0996 - 22112020-22112859 29 2.2
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 2.2
04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012 29 2.2
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 29 2.9
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 29 2.9
03_05_0183 - 21681673-21682524 28 3.9
01_05_0452 + 22371685-22372599,22372686-22372829,22373046-22373417 28 3.9
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 28 5.1
06_03_0009 + 15350387-15350622,15351122-15351363,15351484-153516... 28 5.1
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853... 28 5.1
04_04_1553 - 34363848-34366058,34369087-34370451 27 6.8
05_02_0085 - 6465126-6466049 27 8.9
04_03_0653 - 18429736-18431379 27 8.9
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 35.5 bits (78), Expect = 0.026
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Frame = -3
Query: 480 SYEVPAPRGRAGYVRLNDLQVLRADRGPKDFRAHPLNDSPALLHPTSDLRPGSEPVQSRG 301
S + P PRGR G VR + L +R D G ++ + A +H + R G+ ++R
Sbjct: 105 SKDAPLPRGRRGTVRSSKL--IRPDDGEEEGKEDENRGENAPVH--GEGRRGASR-RARA 159
Query: 300 VPAVNTTTRHAAPPRDARLTG--------RRGDSRRPTTSVSADADPT 181
P V TTR A P TG RRP TS A PT
Sbjct: 160 EPVVAPTTRRRAAPTSKIETGDVAVEAPPAPTTRRRPQTSTEAAPAPT 207
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 32.7 bits (71), Expect = 0.18
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 314 FRVGGFPRSTLQPDTRRHPETPD*RVVEAI-VDDQRRQSPRMPTPPSGIS*RKRRRINRV 138
FR P + L+P RHP P V+ A +R P PPS S R+RRR +
Sbjct: 13 FRSAATPHARLRP---RHPPKPAIVVLAAPPASSSQRHCAIRPVPPSSFSRRRRRRPPAL 69
Query: 137 KFC 129
+ C
Sbjct: 70 RRC 72
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 31.9 bits (69), Expect = 0.31
Identities = 22/66 (33%), Positives = 24/66 (36%)
Frame = -3
Query: 378 PLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVS 199
P D P + P+S P P S A HAAPPR R P S S
Sbjct: 115 PWLDMPPVQGPSSSPSPSPSPAPSPASSAA--VAEHAAPPRRGEEHARPRSIALPPASSS 172
Query: 198 ADADPT 181
DA T
Sbjct: 173 GDAGET 178
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 381 HPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDA 250
HP + P L TS+ +PG PV++ G+ + +T R PPR +
Sbjct: 405 HP--EGPKLHAITSESQPGQAPVRTGGMRLMTSTGRDNQPPRSS 446
>10_08_0996 - 22112020-22112859
Length = 279
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 315 VQSRGVPAVNTTTRHAAPPRDARLTGRRGDS 223
VQ R P T T PPR R TG GDS
Sbjct: 246 VQKRAAPETETETEEE-PPRQRRRTGDAGDS 275
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 340 RSPSGVRTRSE*GGSRGQHYNQTRGATPR 254
+ PS +R+R GSRG+ Y+Q +PR
Sbjct: 122 KKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>04_03_1040 - 21920659-21920856,21920943-21921110,21921173-21922012
Length = 401
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 96 FKPNK*THLQFAKLDPIYSSSFSSTYPTRWGRHPRRLTSLVVDYRLDDPSVGRLGVAPRV 275
F N H Q A LD + ++ Y RWG+H R + Y P + R G++
Sbjct: 87 FADNLMLHHQIAHLDT-FQLHVNNVY--RWGQHASRWIRRSIKYNTKVPGIPRPGLSCSS 143
Query: 276 W 278
W
Sbjct: 144 W 144
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 498 RAGGRTSYEVPAPRGRAGYVRLNDLQVLRADRGPKDFRAHPLNDS-PALLHPTSDLRPGS 322
R GR P R GYV+ D + AD+G A P ++ P +H T + P +
Sbjct: 139 RGRGRGRGRPPTKRKEVGYVQFEDESSMFADQG----EALPGEETVPETIHGTESVPPST 194
Query: 321 EP 316
P
Sbjct: 195 HP 196
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 381 HP-LNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRD 253
HP L +PA P +L+P P P+ T AAP RD
Sbjct: 9 HPALQPAPAPAPPPPNLKPKPAPTTRGPCPSPRTLVARAAPRRD 52
>03_05_0183 - 21681673-21682524
Length = 283
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 315 VQSRGVPAVNTTTRHAAPPRDARLTGRRGDS 223
VQ R P T T PPR R TG GDS
Sbjct: 250 VQKRPAPETETETEEE-PPRQRRRTGDAGDS 279
>01_05_0452 + 22371685-22372599,22372686-22372829,22373046-22373417
Length = 476
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 138 DPIYSSSFSSTYPTRWGRHPRRLTSLVVDYRLDDPSVGRLGVAPRV 275
D + +S+ S + + W P RL + +R D +GR GVA V
Sbjct: 52 DAVATSALSPRWKSLWSSVPLRLDDAGLLHRRDGTRLGREGVAATV 97
>09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 445 PRAPPRRGDLVGGSAPGP 498
P PP+ G LVGGS P P
Sbjct: 1200 PATPPKGGPLVGGSLPCP 1217
>06_03_0009 +
15350387-15350622,15351122-15351363,15351484-15351648,
15352101-15352198,15352210-15352590
Length = 373
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 375 LNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGD 226
L D P L S+ +PG PV++ G+ + +T P + R + R D
Sbjct: 255 LQDGPKLHAIASESQPGQAPVRTGGMRLMTSTGGTTNPQSEWRSSSSRWD 304
>02_04_0191 -
20783143-20784365,20784453-20784597,20784977-20785345,
20786164-20786250,20786405-20786603,20786733-20786818
Length = 702
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 385 GPPTKRLPCTLTPDVRSPSGVRTRSE*GGSRGQHYNQTRGATPRRPTDGSS 233
G P++ L T V + S V + G S G H ++T+ A P GSS
Sbjct: 458 GGPSQVLTAHATEQVHNVSEVAGVNPLGQSAGVHLSETKKALNTTPVSGSS 508
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 191 ASAETDVVGRRLSPRRPVSRASRGGAACLVVVLTAGTPLL*T 316
A A ++ R SPRR V R +R A LVV T +P L T
Sbjct: 13 ALAAAALLLRSCSPRRAVLRRARAVHALLVVSSTPSSPALTT 54
>05_02_0085 - 6465126-6466049
Length = 307
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -2
Query: 379 PTKRLPCTLTPDVRSPSGVRTRSE*GGSRGQHYNQTRGATPRRPTDGSSRR*STTNDVSL 200
PTK+ L+P R+ SG T+ S + R RR + G + + T D SL
Sbjct: 6 PTKQ---PLSPLPRAASGSPTKPTPSPSPSPASARRRRVL-RRGSPGRIKSLAATFDTSL 61
Query: 199 RGCRPHLV 176
RGCR L+
Sbjct: 62 RGCRRRLL 69
>04_03_0653 - 18429736-18431379
Length = 547
Score = 27.1 bits (57), Expect = 8.9
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Frame = -3
Query: 474 EVPAPRGR-AGYVRLNDLQVL--RADRGPKDFRAHPLNDSPALLHPTSDLRPGSEPVQSR 304
E+P P A + RL +L V+ RG F H + AL +R G V S
Sbjct: 427 EIPWPPAESARHERLAELAVVGFAETRGQVGFVRHVVEACVALRRVVL-VRRGRVVVGSE 485
Query: 303 G-VPAVNTTTRHAAPPRDARLTGRRGDSRRPTTS 205
G AA PR+ + G GD RPT +
Sbjct: 486 GRYWDWKLVAAEAAAPREGEVGGGGGDGERPTAA 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,524,780
Number of Sequences: 37544
Number of extensions: 343229
Number of successful extensions: 1201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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