Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120154.Seq
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)               33   0.11 
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.14 
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)                 31   0.74 
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)                    29   1.7  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   2.3  
SB_51519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_48860| Best HMM Match : LEA_1 (HMM E-Value=8.8)                     28   4.0  
SB_31844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_32806| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    27   6.9  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     27   9.2  
SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)              27   9.2  
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.2  
SB_868| Best HMM Match : SCRL (HMM E-Value=4.5)                        27   9.2  

>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 381 HPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNT-TTRHAAPPRDARLTGRRGDSRRPT 211
           HP  D     HP  D+R    P +SRG P+  + TT+H  P RD R TG      R T
Sbjct: 491 HPSRDIRTTGHPPRDVRTTRRPSRSRGYPSRGSHTTKH--PSRDIRTTGHSSRDVRTT 546


>SB_35734| Best HMM Match : Extensin_2 (HMM E-Value=0.52)
          Length = 460

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 393 DFRAHPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRP 214
           DF  H +   PA+  P SDLR    P+++     ++ T +   P + A+   RR  +  P
Sbjct: 177 DFPGHSVPRRPAIRPPNSDLRANCGPMENDTTTRLDYTKKQILPAQSAKPVYRRPSTGPP 236

Query: 213 TTSVS 199
              ++
Sbjct: 237 FQGIT 241


>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +3

Query: 54  RRIEQM*RVLISIIFKPNK*THLQFAKLDPIYSSSFSSTYPTRWGRHPRRLTSLVVDYRL 233
           RR  +    LI   +KP     L F+KL+ + S S S     +  R  R++T LV+D+  
Sbjct: 35  RRNNEYKNYLIKQGYKPE----LVFSKLNEVASLSRSQLLKPKSNRAKRKVTPLVIDFNT 90

Query: 234 DDPSVGRL 257
           + P +G++
Sbjct: 91  NLPDIGQI 98


>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
          Length = 410

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
 Frame = +2

Query: 188 SASAETDVVGRRLSPR-RPVSRASRGGAACLVVVLTAGTPLL*TGSDPGRRSDVGCKSAG 364
           S   E  VV R   P+ + +    R GAA  VV       +      PG R+      AG
Sbjct: 211 SPYGEGIVVSREKDPKYQNIETGERCGAAGHVVARCPAPAVPVAAGSPGSRAVSVAGGAG 270

Query: 365 ESFSGWALKSLGPRSALNTCRSLSLTYPARPLGAGTS*EVRP 490
              +  A +S+ P  A     S+S++ P+     G + E RP
Sbjct: 271 APVATSADRSVSPGDAEPASSSISVSVPSAQAEQGRTTEGRP 312


>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 434 STICRC*EQIAG---PRILGPTH*TTPLHSYTRRPISVRGQNPFRVGGFPRSTL 282
           +T+C     I G   P    P   T+PL  YT    S +  NP+R   F RS+L
Sbjct: 336 ATMCSAPVSIPGTGSPHSYTPQSPTSPLGQYTSSYGSQKQANPYRASSFVRSSL 389


>SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)
          Length = 505

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -3

Query: 282 TTRHAAP----PRDARLTGRRGDSRRPTTSVSADADPT 181
           +++HA+P    PR+ R+ G RG  +R     +ADADPT
Sbjct: 49  SSQHASPRPNLPRNVRI-GNRGWQQRRDDQANADADPT 85


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = -1

Query: 398 PRILGPTH*TTPLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPETPD*RVVEAIVD 219
           PR   P + T  +H   R P+ V   +P RV   PR+     T  H        V A   
Sbjct: 717 PRTPLPAYFTPSVHQSPRTPVPVY-TSP-RVHHSPRTLFPAYTTPHVHQSPRTPVPAYTS 774

Query: 218 DQRRQSPRMPTP 183
            +  QSPR P P
Sbjct: 775 PRVHQSPRTPLP 786


>SB_51519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 372 NDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPR--DARLTGRRGDSRRPTTSVS 199
           N +P   H T+  +  S  +Q    P  + TT H+A P   +      R +S+R TT +S
Sbjct: 115 NHTPPFRHATTTTQRPSVTLQHHTAPFRHATTPHSALPSRYNNHTASFRHESKRHTTELS 174


>SB_48860| Best HMM Match : LEA_1 (HMM E-Value=8.8)
          Length = 182

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 329 RGQNPFRVGGFPRSTLQPDTRRHPETPD*RVVEAIVDDQRRQSPRMPTPPSG 174
           RG+NP+ VG   +   +P   +H      R  E IV D+  Q  ++   PSG
Sbjct: 79  RGENPYSVGKIVKDKRKPPVAKHKTV---RKTEEIVTDEVVQE-KVKAKPSG 126


>SB_31844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 371 TTPLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPET 252
           T P HS  +  IS      +R    PR+ + P TR  P T
Sbjct: 10  TIPCHSTLQTKISCVNGELYRTRNDPRTRIDPRTRNDPRT 49


>SB_32806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -3

Query: 414 RADRGPKDFRAHPLNDSPALLHPTSD--LRPGSEPVQSRGVPAVNTTTRHAAPPRDARLT 241
           R D  P +  A   +  P+  H T D  +   S   +  G+PA +  TR    P D+R+T
Sbjct: 93  RDDGMPSNSHATRDDGMPSYSHATRDDGMPSNSHETRDDGMPADSHATRDDGMPSDSRVT 152


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 348  PTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTS 205
            PT+D +  S+P  +   P   TT+  A P  +        ++ +PTT+
Sbjct: 3094 PTTDNKQQSQPQTTTAEPITKTTSTTAKPTTNNNSKPTTNNNSKPTTN 3141


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 348  PTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLT----GRRGDSRRPTTSV 202
            P  +L+P +    +R      T T+ A+P +  R+T     + GD+   TT+V
Sbjct: 1857 PQIELKPKASGAATRMTSKTTTVTKGASPAKTTRVTKTTETKNGDATSKTTTV 1909


>SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)
          Length = 320

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -3

Query: 432 NDLQVLRADRGPKDFRAHPLNDSPALLHPT-SDLRPGS-EPVQSRGVPAVNTTTRHAAPP 259
           ++L   R D  P DF     +  P+ LH T  D  P      +  G+P+   TTR    P
Sbjct: 56  SNLHTTRGDEMPSDFHTIRGDGMPSDLHTTRGDEMPSDLHTTRGDGMPSNLHTTRGDGMP 115

Query: 258 RDARLTGRRGD 226
            +   T  RGD
Sbjct: 116 SNLHTT--RGD 124


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 345  TSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVSAD 193
            +S +R GS  V+ +G   ++   RHA+  R       +GD  R  + V+AD
Sbjct: 1336 SSSIRRGSN-VKEKGHTRMDVRERHASCTRPVNDESSKGDRIRQRSPVNAD 1385


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 87   SIIFKPNK*TH-LQFAKLDPIYSSSFSSTYPTRWGRH 194
            +++F+ N+  H L+    +P +++ +   YP  W RH
Sbjct: 2781 TVVFRGNRDRHSLKVNAFNPPFTARYVRVYPRTWHRH 2817


>SB_868| Best HMM Match : SCRL (HMM E-Value=4.5)
          Length = 391

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 366 SPALLHPTSDL---RPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRR 232
           SP L+    DL   RP ++ +Q   + A+    ++A P    + TGRR
Sbjct: 275 SPRLIEECQDLLSGRPATQAIQVARIEAIPQYHKNAKPNSSGQNTGRR 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,702
Number of Sequences: 59808
Number of extensions: 357699
Number of successful extensions: 1241
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)