Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120154.Seq
         (515 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U73737-1|AAB47425.1| 1360|Homo sapiens hMSH6 protein.                  30   5.5  
U54777-1|AAB39212.2| 1360|Homo sapiens hMSH6 protein protein.          29   7.3  
U28946-1|AAC50461.1| 1360|Homo sapiens G/T mismatch binding prot...    29   7.3  
BC104665-1|AAI04666.1|  252|Homo sapiens MSH6 protein protein.         29   7.3  
BC004246-1|AAH04246.1| 1360|Homo sapiens mutS homolog 6 (E. coli...    29   7.3  
AY082894-1|AAL87401.1| 1358|Homo sapiens mutS homolog 6 (E. coli...    29   7.3  
AJ242655-1|CAB65089.2|  722|Homo sapiens putative intermediate f...    29   7.3  
AB069982-1|BAB63205.1|  715|Homo sapiens HeLa mDia interacting p...    29   7.3  

>U73737-1|AAB47425.1| 1360|Homo sapiens hMSH6 protein.
          Length = 1360

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = -3

Query: 348 PTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVSADADP 184
           P +   PG +   S   P      R A+PP+   L G    S  P    S D  P
Sbjct: 38  PEASPSPGGDAAWSEAGPGPRPLARSASPPKAKNLNGGLRRSVAPAAPTSCDFSP 92


>U54777-1|AAB39212.2| 1360|Homo sapiens hMSH6 protein protein.
          Length = 1360

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = -3

Query: 348 PTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVSADADP 184
           P +   PG +   S   P      R A+PP+   L G    S  P    S D  P
Sbjct: 38  PGASPSPGGDAAWSEAGPGPRPLARSASPPKAKNLNGGLRRSVAPAAPTSCDFSP 92


>U28946-1|AAC50461.1| 1360|Homo sapiens G/T mismatch binding protein
           protein.
          Length = 1360

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = -3

Query: 348 PTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVSADADP 184
           P +   PG +   S   P      R A+PP+   L G    S  P    S D  P
Sbjct: 38  PGASPSPGGDAAWSEAGPGPRPLARSASPPKAKNLNGGLRRSVAPAAPTSCDFSP 92


>BC104665-1|AAI04666.1|  252|Homo sapiens MSH6 protein protein.
          Length = 252

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = -3

Query: 348 PTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVSADADP 184
           P +   PG +   S   P      R A+PP+   L G    S  P    S D  P
Sbjct: 38  PGASPSPGGDAAWSEAGPGPRPLARSASPPKAKNLNGGLRRSVAPAAPTSCDFSP 92


>BC004246-1|AAH04246.1| 1360|Homo sapiens mutS homolog 6 (E. coli)
           protein.
          Length = 1360

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = -3

Query: 348 PTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVSADADP 184
           P +   PG +   S   P      R A+PP+   L G    S  P    S D  P
Sbjct: 38  PGASPSPGGDAAWSEAGPGPRPLARSASPPKAKNLNGGLRRSVAPAAPTSCDFSP 92


>AY082894-1|AAL87401.1| 1358|Homo sapiens mutS homolog 6 (E. coli)
           protein.
          Length = 1358

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = -3

Query: 348 PTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRPTTSVSADADP 184
           P +   PG +   S   P      R A+PP+   L G    S  P    S D  P
Sbjct: 38  PGASPSPGGDAAWSEAGPGPRPLARSASPPKAKNLNGGLRRSVAPAAPTSCDFSP 92


>AJ242655-1|CAB65089.2|  722|Homo sapiens putative intermediate
           filaments interacting protein protein.
          Length = 722

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -3

Query: 408 DRGPKDFRAHPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAP 262
           D+GP      P    P LL P S       PV+  GVPA+ ++     P
Sbjct: 654 DKGPFGAGQRPWPGVPRLLEPGSTPSREPHPVERSGVPALTSSWASGCP 702


>AB069982-1|BAB63205.1|  715|Homo sapiens HeLa mDia interacting
           protein protein.
          Length = 715

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -3

Query: 408 DRGPKDFRAHPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAP 262
           D+GP      P    P LL P S       PV+  GVPA+ ++     P
Sbjct: 647 DKGPFGAGQRPWPGVPRLLEPGSTPSREPHPVERSGVPALTSSWASGCP 695


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,017,147
Number of Sequences: 237096
Number of extensions: 1800995
Number of successful extensions: 11608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11603
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)