Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120154.Seq
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40801-5|AAO91727.1|  777|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U40801-4|AAO91728.1|  873|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    29   2.0  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    29   2.0  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z82268-9|CAD89738.1|  509|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL023835-17|CAD89760.1|  509|Caenorhabditis elegans Hypothetical...    27   6.0  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    27   6.0  
Z35637-6|CAA84685.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U40801-5|AAO91727.1|  777|Caenorhabditis elegans Hypothetical
           protein F28E10.1b protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 365 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPETP 249
           P+ S +R+P+S   ++ F +GG  RST   + R+ PE P
Sbjct: 524 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPP 561


>U40801-4|AAO91728.1|  873|Caenorhabditis elegans Hypothetical
           protein F28E10.1c protein.
          Length = 873

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 365 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPETP 249
           P+ S +R+P+S   ++ F +GG  RST   + R+ PE P
Sbjct: 620 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPP 657


>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
           protein F28E10.1a protein.
          Length = 1134

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 365 PLHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPETP 249
           P+ S +R+P+S   ++ F +GG  RST   + R+ PE P
Sbjct: 666 PITSPSRKPVSPEPRHLFVMGG-RRSTTPQEDRKVPEPP 703


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 132 KLDPIYSSSFSSTYPTRWGRHPRRLTSLVVDYR 230
           ++DP+       + P+R+G+HP R TS++ + R
Sbjct: 212 RIDPVDHQRPIDSQPSRFGQHPSRATSVLQNLR 244


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 132 KLDPIYSSSFSSTYPTRWGRHPRRLTSLVVDYR 230
           ++DP+       + P+R+G+HP R TS++ + R
Sbjct: 111 RIDPVDHQRPIDSQPSRFGQHPSRATSVLQNLR 143


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 438 RLNDLQVLRADRGPKDFRAH-PLNDSPALLHPTS 340
           RL+D+ + R+DR  +  R+H  +  SP L H TS
Sbjct: 210 RLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTS 243


>Z82268-9|CAD89738.1|  509|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1b protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -3

Query: 372 NDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRP 214
           NDSP  LH +S  R  S P +    P      R ++P RDAR      DSR P
Sbjct: 214 NDSP--LHRSSAARRHSPPPRRASPPR-----RTSSPKRDARPAREIRDSREP 259


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -3

Query: 372 NDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRP 214
           NDSP  LH +S  R  S P +    P      R ++P RDAR      DSR P
Sbjct: 214 NDSP--LHRSSAARRHSPPPRRASPPR-----RTSSPKRDARPAREIRDSREP 259


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 376 TKRLPCTLTPDVRSPSGVRTRSE*GGSRGQHYNQTRGATPRRPTDGSSRR*STTNDVSLR 197
           T+    T T +   P      +E   +RG+ ++        +PT   S   +TT DV  R
Sbjct: 692 TEESTTTTTTEASVPPATTVIAEVHETRGRPFSSDSDLLALKPTVSQSECPATTFDVGGR 751

Query: 196 GC 191
           GC
Sbjct: 752 GC 753


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 376 TKRLPCTLTPDVRSPSGVRTRSE*GGSRGQHYNQTRGATPRRPTDGSSRR*STTNDVSLR 197
           T+    T T +   P      +E   +RG+ ++        +PT   S   +TT DV  R
Sbjct: 483 TEESTTTTTTEASVPPATTVIAEVHETRGRPFSSDSDLLALKPTVSQSECPATTFDVGGR 542

Query: 196 GC 191
           GC
Sbjct: 543 GC 544


>AL023835-17|CAD89760.1|  509|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1b protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -3

Query: 372 NDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRP 214
           NDSP  LH +S  R  S P +    P      R ++P RDAR      DSR P
Sbjct: 214 NDSP--LHRSSAARRHSPPPRRASPPR-----RTSSPKRDARPAREIRDSREP 259


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -3

Query: 372 NDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDSRRP 214
           NDSP  LH +S  R  S P +    P      R ++P RDAR      DSR P
Sbjct: 214 NDSP--LHRSSAARRHSPPPRRASPPR-----RTSSPKRDARPAREIRDSREP 259


>Z35637-6|CAA84685.1|  341|Caenorhabditis elegans Hypothetical
           protein C03C10.1 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 336 LRPGSEPVQSRGVPAVNTTTRHAAPP 259
           L+  ++  QS GVP  NTTT+ A  P
Sbjct: 300 LKQKAQQSQSSGVPGTNTTTQGATVP 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,490
Number of Sequences: 27780
Number of extensions: 246003
Number of successful extensions: 638
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)