Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120154.Seq
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   4.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 158 RRRINRVKFCKL*MCLFIWLKNNGYQ 81
           +R+ NR ++C+   CL + +K    Q
Sbjct: 156 KRQRNRCQYCRYQKCLAMGMKREAVQ 181


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 158 RRRINRVKFCKL*MCLFIWLKNNGYQ 81
           +R+ NR ++C+   CL + +K    Q
Sbjct: 156 KRQRNRCQYCRYQKCLAMGMKREAVQ 181


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 424 QIVESHIPRAPP 459
           Q+  SHIP APP
Sbjct: 97  QVQGSHIPTAPP 108


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 132 KLDPIYSSSFSSTYPTRWGRHPRRL 206
           KL P Y       Y +  GRH +RL
Sbjct: 34  KLQPTYFHHTYIIYESLCGRHEKRL 58


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 132 KLDPIYSSSFSSTYPTRWGRHPRRL 206
           KL P Y       Y +  GRH +RL
Sbjct: 34  KLQPTYFHHTYIIYESLCGRHEKRL 58


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 304 GGSRGQHYNQTRGATPRRPTDGSSRR*STTND 209
           GGSRG+  N+ R     +  DG        ND
Sbjct: 89  GGSRGRGGNRGRTGFNNKNKDGDDNNDYEDND 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,783
Number of Sequences: 438
Number of extensions: 2819
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)