Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120154.Seq
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    32   0.26 
At5g47580.1 68418.m05873 expressed protein strong similarity to ...    31   0.61 
At5g36970.1 68418.m04433 harpin-induced protein-related / HIN1-r...    30   1.1  
At1g54070.1 68414.m06161 dormancy/auxin associated protein-related     28   4.3  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    27   5.7  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    27   7.5  
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    27   7.5  

>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -2

Query: 340 RSPSGVRTRSE*GGSRGQHYNQTRGATPRRPTDGSSR 230
           R PSG R RS  G SR +  +++R  +PRRP+D  SR
Sbjct: 142 REPSGSRDRSH-GRSRSRSISRSR--SPRRPSDSRSR 175


>At5g47580.1 68418.m05873 expressed protein strong similarity to
           unknown protein (pir||E71441)
          Length = 748

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 374 SGWALKSLGPRSALNTCRSLSLTYPARPLGAG 469
           S W +K+L   S    C+++ LTY +R  G G
Sbjct: 609 SHWPIKTLAANSMYRICQTILLTYESRDYGTG 640


>At5g36970.1 68418.m04433 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related weak
           similarity to harpin inducing protein (hin1), Nicotiana
           tabacum, EMBL:AF212183, GI:1619321
          Length = 248

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 387 RAHPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDAR 247
           + HP++D  A  HPT+ L P        G P          PPR+ +
Sbjct: 6   KIHPVSDPEAPPHPTAPLVPRGSSRSEHGDPTKTQQAAPLDPPREKK 52


>At1g54070.1 68414.m06161 dormancy/auxin associated protein-related
          Length = 123

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 214 WSSTIASTTRQSGVSGWRRVSGCSVDRGNPPTLN 315
           W  T+A  T  +G+   R+    S  R +PP+L+
Sbjct: 8   WDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLS 41


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -1

Query: 362 LHSYTRRPISVRGQNPFRVGGFPRSTLQPDTRRHPETPD*RVVEAIVDDQRRQSPRMPTP 183
           LH +  RP++  G +P  +   P    +   R  P TP         +  R  +P  P P
Sbjct: 103 LHHHEARPMN--GHDPLAITPSPPPPSKTHERSRPITPSPPPPSKTHEPSRPNTPPPPPP 160

Query: 182 PS 177
           PS
Sbjct: 161 PS 162


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
 Frame = -3

Query: 378 PLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTT--TRHAAPPRDARLTGRRGDSRRPTTS 205
           P   SP+   PT+   P   P  S   P+ N T  +  A PP    +  R     +PT  
Sbjct: 155 PPKPSPSTPTPTTTTSPPPPPATSASPPSSNPTDPSTLAPPPTPLPVVPREKPIAKPTGP 214

Query: 204 VSADADPT 181
            S + + T
Sbjct: 215 ASNNGNNT 222


>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 399 PKDFRAHPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPRDARLTGRRGDS 223
           P   ++HP + S   + PT+   P S P  +            A PPR A+  G  G S
Sbjct: 460 PPVLQSHPHSSSSPRVSPTASPPPASSPRLNELHELPRPPGHFAPPPRRAKSPGLVGHS 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,630,088
Number of Sequences: 28952
Number of extensions: 227045
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)