Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120152.Seq
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   2.9  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   3.8  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    25   8.8  

>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 471 ITDFSYRYYNDQFSEI 424
           IT+FSYRY ND ++ I
Sbjct: 450 ITEFSYRYDNDDYANI 465


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 610  VLTETRFHLFVCICRKSNDPSWTNKVCVAASLMD 711
            ++T+ + H F    RK   PSW  ++ V  SL D
Sbjct: 1349 IVTDNQDHSFKTKSRKGPSPSWNEEIPVKWSLGD 1382


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 181 YLKH*IKIISK*YLASFQPTLNNKTYH 101
           +LKH + I+SK    SFQP+  +K ++
Sbjct: 16  FLKHIVSILSKECPLSFQPSYYSKMFN 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,480
Number of Sequences: 5004
Number of extensions: 50822
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)