Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120152.Seq
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal enha...    29   3.6  
U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    29   3.6  
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    29   3.6  
Z47070-4|CAA87342.1|  363|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform b protein.
          Length = 169

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 604 YQVLTETRFHLFVCIC-RKSNDPSWTNKVCVAASLMDN 714
           YQ+  E  F  + C+C +K +D  W    C A + MDN
Sbjct: 73  YQIAPERNFKSWRCVCAKKMHDGQWCK--CRAETTMDN 108


>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 604 YQVLTETRFHLFVCIC-RKSNDPSWTNKVCVAASLMDN 714
           YQ+  E  F  + C+C +K +D  W    C A + MDN
Sbjct: 73  YQIAPERNFKSWRCVCAKKMHDGQWCK--CRAETTMDN 108


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 604 YQVLTETRFHLFVCIC-RKSNDPSWTNKVCVAASLMDN 714
           YQ+  E  F  + C+C +K +D  W    C A + MDN
Sbjct: 71  YQIAPERNFKSWRCVCAKKMHDGQWCK--CRAETTMDN 106


>Z47070-4|CAA87342.1|  363|Caenorhabditis elegans Hypothetical
           protein T09B9.5 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 576 SGQTHPTRVFLGKISINVIIFSRYTILR*LFVLIVI 469
           S   HP R  L  ISIN  I S + + R  F+ +V+
Sbjct: 48  SPMPHPQRRLLASISINFAILSGFQLARNFFLFLVM 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,302,492
Number of Sequences: 27780
Number of extensions: 271510
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)